Variant report

Variant	rs3115925
Chromosome Location	chr8:94958095-94958096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:94958024-94958143	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr8:94957863-94958153	MCF10A-Er-Src	breast:	n/a	n/a
3	GATA3	chr8:94956028-94958150	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
PSMA2P2	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs16916320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.83[TSI][hapmap]
rs3115916	0.89[EUR][1000 genomes]
rs3115917	0.89[EUR][1000 genomes]
rs3115918	0.89[EUR][1000 genomes]
rs3115919	0.89[EUR][1000 genomes]
rs3115921	0.89[EUR][1000 genomes]
rs3115926	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115931	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3115936	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3115937	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3115941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3115946	0.94[EUR][1000 genomes]
rs3133986	0.89[EUR][1000 genomes]
rs3133988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3133993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133997	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3133998	0.90[EUR][1000 genomes]
rs3133999	1.00[EUR][1000 genomes]
rs3134000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134001	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134002	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs3134005	1.00[EUR][1000 genomes]
rs3134006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs3134007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3134008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs3134009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs3134011	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs3134013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3134016	0.94[EUR][1000 genomes]
rs55691744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55914182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58454714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58866863	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59023505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59797932	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61294318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61467536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61495155	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61708878	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522989	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62523005	0.94[EUR][1000 genomes]
rs62523006	0.94[EUR][1000 genomes]
rs62523009	0.94[EUR][1000 genomes]
rs62523010	0.94[EUR][1000 genomes]
rs62523011	0.94[EUR][1000 genomes]
rs62523014	0.89[EUR][1000 genomes]
rs62523015	0.89[EUR][1000 genomes]
rs62523016	0.89[EUR][1000 genomes]
rs6983462	0.83[EUR][1000 genomes]
rs6989092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6997830	0.89[EUR][1000 genomes]
rs7006289	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs7836063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs7840040	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94956000-94958200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:94956600-94958200	Enhancers	NH-A	brain
3	chr8:94956600-94958800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:94958000-94960600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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