Variant report

Variant	rs3133998
Chromosome Location	chr8:94965967-94965968
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:94965588..94968919-chr8:94970973..94974619,3	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs3115925	0.90[EUR][1000 genomes]
rs3115926	0.90[EUR][1000 genomes]
rs3115927	0.90[EUR][1000 genomes]
rs3115931	0.90[EUR][1000 genomes]
rs3115936	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3115937	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3115941	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3115946	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3133988	0.90[EUR][1000 genomes]
rs3133989	0.90[EUR][1000 genomes]
rs3133990	0.90[EUR][1000 genomes]
rs3133993	0.90[EUR][1000 genomes]
rs3133997	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3133999	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3134000	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134001	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134002	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134003	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134004	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134005	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3134006	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134007	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134008	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134009	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134011	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134013	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3134016	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55691744	0.90[EUR][1000 genomes]
rs55914182	0.90[EUR][1000 genomes]
rs58454714	0.90[EUR][1000 genomes]
rs58866863	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59023505	0.90[EUR][1000 genomes]
rs59797932	0.90[EUR][1000 genomes]
rs61294318	0.90[EUR][1000 genomes]
rs61708878	0.90[EUR][1000 genomes]
rs62522980	0.90[EUR][1000 genomes]
rs62522989	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62523005	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62523006	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62523009	0.85[EUR][1000 genomes]
rs62523010	0.85[EUR][1000 genomes]
rs62523011	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62523014	0.84[AMR][1000 genomes]
rs62523015	0.84[AMR][1000 genomes]
rs62523016	0.84[AMR][1000 genomes]
rs7006289	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7836063	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7840040	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94964400-94966000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:94964800-94966000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:94965400-94967400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:94965400-94967600	Weak transcription	HepG2	liver
5	chr8:94965400-94969800	Weak transcription	Fetal Lung	lung
6	chr8:94965600-94969000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:94965600-94971800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:94965800-94966200	Weak transcription	Placenta	Placenta
9	chr8:94965800-94967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:94965800-94967400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:94965800-94967400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:94965800-94967800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:94965800-94968600	Weak transcription	Fetal Intestine Large	intestine
14	chr8:94965800-94968600	Weak transcription	Fetal Intestine Small	intestine
15	chr8:94965800-94970200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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