The 2.0 version of rSNPBase

Variant report

Variant rs3118364
Chromosome Location chr6:28852878-28852879
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:28849400-28863000 Weak transcription Right Atrium heart
2 chr6:28851800-28853000 Flanking Active TSS Dnd41 blood
3 chr6:28851800-28853400 Bivalent Enhancer Primary B cells from peripheral blood blood
4 chr6:28852000-28853000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr6:28852000-28853200 Flanking Active TSS Primary T cells fromperipheralblood blood
6 chr6:28852000-28853200 Flanking Bivalent TSS/Enh Monocytes-CD14+_RO01746 blood
7 chr6:28852200-28853000 Active TSS Primary T helper naive cells fromperipheralblood blood
8 chr6:28852200-28853000 Enhancers Primary mononuclear cells fromperipheralblood Blood
9 chr6:28852200-28853200 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
10 chr6:28852200-28853200 Active TSS Duodenum Mucosa Duodenum
11 chr6:28852200-28853400 Active TSS Primary T regulatory cells fromperipheralblood blood
12 chr6:28852400-28853000 Enhancers Primary hematopoietic stem cells blood
13 chr6:28852400-28853000 Active TSS Primary T helper cells PMA-I stimulated --
14 chr6:28852400-28853200 Bivalent Enhancer Primary monocytes fromperipheralblood blood
15 chr6:28852400-28853200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr6:28852400-28853200 Active TSS Primary T killer naive cells fromperipheralblood blood
17 chr6:28852400-28853400 Enhancers Primary T cells from cord blood blood
18 chr6:28852400-28853400 Active TSS Primary hematopoietic stem cells short term culture blood
19 chr6:28852400-28854200 ZNF genes & repeats Fetal Thymus thymus
20 chr6:28852600-28853200 Active TSS Rectal Mucosa Donor 29 rectum
21 chr6:28852600-28853400 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
22 chr6:28852600-28853400 Active TSS Fetal Intestine Small intestine
23 chr6:28852600-28853400 Active TSS Fetal Kidney kidney
24 chr6:28852600-28853400 Active TSS Right Ventricle heart
25 chr6:28852600-28853600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
26 chr6:28852800-28853000 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
27 chr6:28852800-28853000 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
28 chr6:28852800-28853000 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin01 Skin
29 chr6:28852800-28853000 Flanking Bivalent TSS/Enh Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr6:28852800-28853000 Flanking Bivalent TSS/Enh Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr6:28852800-28853000 Flanking Bivalent TSS/Enh Foreskin Melanocyte Primary Cells skin01 Skin
32 chr6:28852800-28853000 Bivalent/Poised TSS Brain Germinal Matrix brain
33 chr6:28852800-28853000 Flanking Active TSS Thymus Thymus
34 chr6:28852800-28853200 Active TSS Primary T helper 17 cells PMA-I stimulated --
35 chr6:28852800-28853200 Active TSS Primary T helper cells fromperipheralblood blood
36 chr6:28852800-28853200 Active TSS Cortex derived primary cultured neurospheres brain
37 chr6:28852800-28853200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
38 chr6:28852800-28853200 Bivalent/Poised TSS Fetal Intestine Large intestine
39 chr6:28852800-28853200 Bivalent/Poised TSS Fetal Stomach stomach
40 chr6:28852800-28853200 Active TSS HepG2 liver
41 chr6:28852800-28853400 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
42 chr6:28852800-28853400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015