Variant report
Variant | rs3130846 |
---|---|
Chromosome Location | chr6:28926237-28926238 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000227214 | Chromatin interaction |
ENSG00000263426 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs13206458 | 1.00[AFR][1000 genomes];0.96[EUR][1000 genomes] |
rs3117146 | 0.89[EUR][1000 genomes] |
rs3118357 | 0.93[EUR][1000 genomes] |
rs3118359 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs3118360 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs3118361 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3118364 | 0.87[EUR][1000 genomes] |
rs3118365 | 0.87[EUR][1000 genomes] |
rs3118366 | 0.91[EUR][1000 genomes] |
rs3118367 | 0.93[EUR][1000 genomes] |
rs3129791 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs3129794 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs3129797 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs3129798 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs3130777 | 1.00[AFR][1000 genomes] |
rs3130837 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs3130838 | 0.93[EUR][1000 genomes] |
rs3130844 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3130845 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3130847 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3130885 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs3130887 | 0.91[EUR][1000 genomes] |
rs3130888 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs3130890 | 1.00[AFR][1000 genomes] |
rs3130891 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs3130892 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3130893 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs3130894 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs3130895 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs3130896 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs3131068 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3131069 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3131071 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3131072 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3131073 | 0.93[EUR][1000 genomes] |
rs3131075 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3131076 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3131081 | 0.89[EUR][1000 genomes] |
rs3131085 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs3131093 | 0.91[EUR][1000 genomes] |
rs3131094 | 0.93[EUR][1000 genomes] |
rs3131095 | 0.93[EUR][1000 genomes] |
rs3131096 | 0.93[EUR][1000 genomes] |
rs3131097 | 0.93[EUR][1000 genomes] |
rs3131101 | 0.93[EUR][1000 genomes] |
rs3131335 | 0.91[EUR][1000 genomes] |
rs3131336 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs3131340 | 0.82[EUR][1000 genomes] |
rs3131341 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs3131343 | 0.80[EUR][1000 genomes] |
rs3131345 | 0.93[EUR][1000 genomes] |
rs3132373 | 0.80[EUR][1000 genomes] |
rs3132374 | 0.89[EUR][1000 genomes] |
rs3132376 | 0.93[EUR][1000 genomes] |
rs3132378 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs3132382 | 1.00[AFR][1000 genomes];0.96[EUR][1000 genomes] |
rs3132384 | 0.93[EUR][1000 genomes] |
rs3132385 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs3132387 | 0.91[EUR][1000 genomes] |
rs3132388 | 0.93[EUR][1000 genomes] |
rs3132389 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs3132391 | 0.93[EUR][1000 genomes] |
rs3132392 | 0.93[EUR][1000 genomes] |
rs3132393 | 0.91[EUR][1000 genomes] |
rs3132394 | 0.91[EUR][1000 genomes] |
rs3132395 | 0.91[EUR][1000 genomes] |
rs3132396 | 0.82[EUR][1000 genomes] |
rs3135293 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs3135294 | 0.80[EUR][1000 genomes] |
rs3135295 | 0.93[EUR][1000 genomes] |
rs3135297 | 0.87[EUR][1000 genomes] |
rs3135298 | 0.91[EUR][1000 genomes] |
rs3135299 | 0.89[EUR][1000 genomes] |
rs3135300 | 0.93[EUR][1000 genomes] |
rs3135302 | 0.93[EUR][1000 genomes] |
rs3135304 | 0.93[EUR][1000 genomes] |
rs3135306 | 0.93[EUR][1000 genomes] |
rs3135307 | 0.93[EUR][1000 genomes] |
rs3135308 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs3135309 | 0.93[EUR][1000 genomes] |
rs3135310 | 0.93[EUR][1000 genomes] |
rs3135311 | 0.93[EUR][1000 genomes] |
rs3135312 | 0.93[EUR][1000 genomes] |
rs3135313 | 0.93[EUR][1000 genomes] |
rs3135316 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs3135317 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs3135318 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3135325 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4324798 | 0.82[EUR][1000 genomes] |
rs7760313 | 0.91[EUR][1000 genomes] |
rs7761321 | 0.80[EUR][1000 genomes] |
rs7767099 | 0.80[EUR][1000 genomes] |
rs9257217 | 0.80[EUR][1000 genomes] |
rs9257223 | 0.82[EUR][1000 genomes] |
rs9257245 | 0.91[EUR][1000 genomes] |
rs9257249 | 0.89[EUR][1000 genomes] |
rs9257250 | 0.89[EUR][1000 genomes] |
rs9257262 | 0.93[EUR][1000 genomes] |
rs9257267 | 0.89[EUR][1000 genomes] |
rs9257272 | 0.93[EUR][1000 genomes] |
rs9257331 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs9257345 | 0.89[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv883519 | chr6:28792477-28936556 | Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 57 gene(s) | inside rSNPs | diseases |
2 | nsv427748 | chr6:28831888-28999434 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 62 gene(s) | inside rSNPs | diseases |
3 | nsv830622 | chr6:28861667-29015804 | Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 59 gene(s) | inside rSNPs | diseases |
4 | nsv1023540 | chr6:28922691-29326018 | Active TSS Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
5 | nsv538169 | chr6:28922691-29326018 | Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
6 | nsv869541 | chr6:28922692-29326017 | Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
7 | nsv916439 | chr6:28922697-29326087 | Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
8 | nsv462668 | chr6:28922719-29342775 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
9 | nsv601213 | chr6:28922719-29342775 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
10 | nsv1015796 | chr6:28923980-29342825 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:28922200-28928400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr6:28922200-28930600 | Weak transcription | Right Atrium | heart |
3 | chr6:28923000-28928600 | Weak transcription | HepG2 | liver |
4 | chr6:28923400-28928600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
5 | chr6:28923800-28928600 | Weak transcription | NHEK | skin |
6 | chr6:28925000-28927000 | Weak transcription | K562 | blood |