Variant report

Variant	rs3130888
Chromosome Location	chr6:28949960-28949961
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr6:28948934-28950362	GM12878	blood:	n/a	n/a
2	MXI1	chr6:28948484-28950141	K562	blood:	n/a	n/a
3	PML	chr6:28947951-28951078	K562	blood:	n/a	n/a
4	CTCF	chr6:28949603-28950119	K562	blood:	n/a	chr6:28949813-28949829
5	NFYA	chr6:28949695-28949963	Hela-S3	cervix:	n/a	n/a
6	IRF4	chr6:28949199-28950267	GM12878	blood:	n/a	n/a
7	JUND	chr6:28949802-28950117	A549	lung:	n/a	n/a
8	ZNF143	chr6:28949764-28950157	GM12878	blood:	n/a	n/a
9	STAT5A	chr6:28947432-28950928	K562	blood:	n/a	chr6:28948572-28948584 chr6:28948629-28948643 chr6:28948631-28948640 chr6:28950129-28950140 chr6:28949208-28949216 chr6:28948632-28948641 chr6:28948571-28948583
10	ZNF384	chr6:28948415-28950109	K562	blood:	n/a	n/a
11	EP300	chr6:28949898-28950100	GM12878	blood:	n/a	n/a
12	ELF1	chr6:28949701-28950178	HepG2	liver:	n/a	n/a
13	ETS1	chr6:28949282-28950330	A549	lung:	n/a	n/a
14	SP1	chr6:28948314-28950218	HepG2	liver:	n/a	chr6:28948570-28948584 chr6:28949811-28949821 chr6:28948569-28948581 chr6:28948571-28948580 chr6:28948569-28948581 chr6:28949811-28949821 chr6:28948576-28948585 chr6:28949824-28949845 chr6:28948575-28948589
15	SIN3AK20	chr6:28949820-28950199	A549	lung:	n/a	n/a
16	THAP1	chr6:28949913-28950102	K562	blood:	n/a	n/a
17	BHLHE40	chr6:28948970-28950167	GM12878	blood:	n/a	n/a
18	TEAD4	chr6:28949180-28950261	ECC-1	luminal epithelium:	n/a	n/a
19	CTCF	chr6:28949693-28950031	GM12878	blood:	n/a	chr6:28949813-28949829
20	MAX	chr6:28949694-28950109	K562	blood:	n/a	n/a
21	ARID3A	chr6:28948436-28950785	HepG2	liver:	n/a	chr6:28949587-28949603
22	SIX5	chr6:28949893-28950176	A549	lung:	n/a	n/a
23	SREBP2	chr6:28947887-28951126	GM12878	blood:	n/a	n/a
24	CEBPB	chr6:28948156-28951133	K562	blood:	n/a	chr6:28950989-28951001
25	YY1	chr6:28949774-28950207	HepG2	liver:	n/a	n/a
26	KAP1	chr6:28948148-28951514	HEK293	kidney:	n/a	n/a
27	TBP	chr6:28948794-28950182	K562	blood:	n/a	n/a
28	RXRA	chr6:28949789-28950115	GM12878	blood:	n/a	chr6:28949815-28949822 chr6:28949810-28949830
29	ZNF217	chr6:28949832-28950169	MCF-7	breast:	n/a	n/a
30	ATF2	chr6:28949565-28950311	H1-hESC	embryonic stem cell:	n/a	n/a
31	MXI1	chr6:28949730-28950747	Hela-S3	cervix:	n/a	n/a
32	MAZ	chr6:28948393-28950877	K562	blood:	n/a	chr6:28949524-28949533
33	FOXA1	chr6:28949802-28950171	T-47D	breast:	n/a	chr6:28950098-28950113
34	NFYB	chr6:28949631-28949973	K562	blood:	n/a	chr6:28949833-28949848
35	FOXA2	chr6:28949702-28950271	A549	lung:	n/a	n/a
36	RAD21	chr6:28949642-28950075	SK-N-SH_RA	brain:	n/a	n/a
37	MYC	chr6:28948388-28951379	K562	blood:	n/a	chr6:28949524-28949533
38	TEAD4	chr6:28948295-28950960	HepG2	liver:	n/a	n/a
39	REST	chr6:28949789-28950024	A549	lung:	n/a	n/a
40	RAD21	chr6:28949567-28950128	HepG2	liver:	n/a	n/a
41	YY1	chr6:28949693-28950176	GM12878	blood:	n/a	n/a
42	TCF3	chr6:28949828-28950128	GM12878	blood:	n/a	n/a
43	MYBL2	chr6:28948301-28950935	HepG2	liver:	n/a	n/a
44	STAT1	chr6:28948339-28950132	Hela-S3	cervix:	n/a	chr6:28948572-28948584 chr6:28948629-28948643 chr6:28948631-28948640 chr6:28949208-28949216 chr6:28948632-28948641 chr6:28948571-28948583
45	POU2F2	chr6:28949763-28950141	GM12891	blood:	n/a	n/a
46	JUND	chr6:28949876-28950112	HepG2	liver:	n/a	n/a
47	PAX5	chr6:28949288-28950140	GM12878	blood:	n/a	n/a
48	HEY1	chr6:28949688-28950125	HepG2	liver:	n/a	n/a
49	POLR2A	chr6:28949925-28949978	MCF10A-Er-Src	breast:	n/a	n/a
50	TAF1	chr6:28949810-28950125	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:28948706..28953416-chr6:28959003..28967079,12	K562	blood:
2	chr6:26123009..26125449-chr6:28949400..28951576,2	K562	blood:
3	chr6:28946686..28952098-chr6:28981757..28987491,9	K562	blood:
4	chr6:28804861..28808227-chr6:28947720..28951878,5	K562	blood:
5	chr6:28907253..28915101-chr6:28945522..28952393,17	K562	blood:
6	chr6:28905933..28927444-chr6:28943937..28954526,53	K562	blood:
7	chr6:28858185..28860648-chr6:28949293..28952393,3	K562	blood:
8	chr6:27099821..27100601-chr6:28949611..28950455,2	Hela-S3	cervix:
9	chr6:28723907..28726622-chr6:28947645..28950512,2	K562	blood:
10	chr6:28687246..28689887-chr6:28948960..28952398,3	K562	blood:
11	chr6:28861427..28869364-chr6:28946251..28954176,23	K562	blood:
12	chr6:28863945..28866493-chr6:28948972..28951087,2	MCF-7	breast:
13	chr6:28916972..28925607-chr6:28947207..28951909,14	K562	blood:
14	chr6:28829291..28833978-chr6:28947381..28950490,6	K562	blood:
15	chr6:28805369..28807414-chr6:28949591..28952908,4	K562	blood:
16	chr6:28948083..28951244-chr6:28977635..28980493,3	K562	blood:
17	chr6:28861427..28866893-chr6:28947878..28954176,14	K562	blood:
18	chr6:28889573..28894329-chr6:28949030..28952998,8	K562	blood:
19	chr6:28889725..28893274-chr6:28947221..28952049,9	MCF-7	breast:
20	chr6:28948241..28954799-chr6:28970209..28976187,12	MCF-7	breast:
21	chr6:27791369..27793553-chr6:28948965..28950721,2	K562	blood:
22	chr6:28949395..28952854-chr6:28970269..28975682,5	K562	blood:
23	chr6:28888560..28894615-chr6:28945306..28952099,20	K562	blood:
24	chr6:28907996..28910654-chr6:28948439..28951310,2	MCF-7	breast:
25	chr6:28678329..28679999-chr6:28949047..28951282,2	K562	blood:

Variant related genes	Relation type
HCG16	TF binding region
HCG15	TF binding region
ENSG00000124635	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000225595	Chromatin interaction
ENSG00000225173	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000204709	Chromatin interaction
ENSG00000224157	Chromatin interaction
ENSG00000204713	Chromatin interaction
ENSG00000197935	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs13206458	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3117146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3118357	0.96[EUR][1000 genomes]
rs3118359	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3118360	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3118361	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3118364	0.91[EUR][1000 genomes]
rs3118365	0.91[EUR][1000 genomes]
rs3118366	0.94[EUR][1000 genomes]
rs3118367	0.96[EUR][1000 genomes]
rs3129120	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3129791	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3129794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3129797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3129798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3130777	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3130828	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3130831	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3130837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3130838	0.96[EUR][1000 genomes]
rs3130844	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3130845	0.92[EUR][1000 genomes]
rs3130846	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3130847	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3130885	0.91[EUR][1000 genomes]
rs3130887	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3130890	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3130891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3130892	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3130893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3130894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3130895	0.91[EUR][1000 genomes]
rs3130896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3131068	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3131069	0.92[EUR][1000 genomes]
rs3131071	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3131072	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3131073	0.89[EUR][1000 genomes]
rs3131075	0.92[EUR][1000 genomes]
rs3131076	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3131081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3131085	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3131093	0.94[EUR][1000 genomes]
rs3131094	0.96[EUR][1000 genomes]
rs3131095	0.96[EUR][1000 genomes]
rs3131096	0.96[EUR][1000 genomes]
rs3131097	0.96[EUR][1000 genomes]
rs3131101	0.89[EUR][1000 genomes]
rs3131335	0.94[EUR][1000 genomes]
rs3131336	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3131340	0.85[EUR][1000 genomes]
rs3131341	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3131343	0.84[EUR][1000 genomes]
rs3131345	0.96[EUR][1000 genomes]
rs3132373	0.84[EUR][1000 genomes]
rs3132374	0.93[EUR][1000 genomes]
rs3132376	0.96[EUR][1000 genomes]
rs3132378	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3132382	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3132384	0.96[EUR][1000 genomes]
rs3132385	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3132387	0.94[EUR][1000 genomes]
rs3132388	0.96[EUR][1000 genomes]
rs3132389	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3132391	0.96[EUR][1000 genomes]
rs3132392	0.96[EUR][1000 genomes]
rs3132393	0.94[EUR][1000 genomes]
rs3132394	0.94[EUR][1000 genomes]
rs3132395	0.94[EUR][1000 genomes]
rs3132396	0.85[EUR][1000 genomes]
rs3135293	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3135294	0.84[EUR][1000 genomes]
rs3135295	0.96[EUR][1000 genomes]
rs3135297	0.91[EUR][1000 genomes]
rs3135298	0.94[EUR][1000 genomes]
rs3135299	0.92[EUR][1000 genomes]
rs3135300	0.96[EUR][1000 genomes]
rs3135302	0.96[EUR][1000 genomes]
rs3135304	0.96[EUR][1000 genomes]
rs3135306	0.96[EUR][1000 genomes]
rs3135307	0.96[EUR][1000 genomes]
rs3135308	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3135309	0.96[EUR][1000 genomes]
rs3135310	0.96[EUR][1000 genomes]
rs3135311	0.96[EUR][1000 genomes]
rs3135312	0.96[EUR][1000 genomes]
rs3135313	0.96[EUR][1000 genomes]
rs3135316	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3135317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3135318	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3135325	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4324798	0.85[EUR][1000 genomes]
rs4947263	0.80[EUR][1000 genomes]
rs7760313	0.94[EUR][1000 genomes]
rs7761321	0.84[EUR][1000 genomes]
rs7766699	0.80[EUR][1000 genomes]
rs7767099	0.84[EUR][1000 genomes]
rs9257192	0.80[EUR][1000 genomes]
rs9257217	0.84[EUR][1000 genomes]
rs9257223	0.85[EUR][1000 genomes]
rs9257227	0.82[EUR][1000 genomes]
rs9257245	0.94[EUR][1000 genomes]
rs9257249	0.92[EUR][1000 genomes]
rs9257250	0.92[EUR][1000 genomes]
rs9257262	0.96[EUR][1000 genomes]
rs9257267	0.93[EUR][1000 genomes]
rs9257272	0.96[EUR][1000 genomes]
rs9257331	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9257345	0.85[EUR][1000 genomes]
rs9257611	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv830622	chr6:28861667-29015804	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
3	nsv1023540	chr6:28922691-29326018	Active TSS Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	nsv538169	chr6:28922691-29326018	Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv869541	chr6:28922692-29326017	Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv916439	chr6:28922697-29326087	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
7	nsv462668	chr6:28922719-29342775	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
8	nsv601213	chr6:28922719-29342775	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
9	nsv1015796	chr6:28923980-29342825	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
10	nsv462669	chr6:28936556-29337500	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
11	nsv601214	chr6:28936556-29337500	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv601215	chr6:28946920-29348297	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3130888	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs3130888	ZFP57	Cis_1M	lymphoblastoid	RTeQTL
rs3130888	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28948200-28950800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:28948200-28950800	Active TSS	Brain Anterior Caudate	brain
3	chr6:28948200-28951000	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr6:28948200-28951000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:28948400-28950600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:28948400-28950600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:28948400-28950600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:28948400-28950600	Active TSS	Brain Cingulate Gyrus	brain
9	chr6:28948400-28950600	Active TSS	Fetal Heart	heart
10	chr6:28948400-28950600	Active TSS	Fetal Kidney	kidney
11	chr6:28948400-28950600	Active TSS	Rectal Smooth Muscle	rectum
12	chr6:28948400-28950600	Active TSS	HSMM	muscle
13	chr6:28948400-28950800	Active TSS	H9 Cell Line	embryonic stem cell
14	chr6:28948400-28950800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:28948400-28950800	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:28948400-28950800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:28948400-28950800	Active TSS	Brain Germinal Matrix	brain
18	chr6:28948400-28950800	Active TSS	Brain Substantia Nigra	brain
19	chr6:28948400-28950800	Active TSS	Right Ventricle	heart
20	chr6:28948400-28950800	Active TSS	A549	lung
21	chr6:28948400-28951000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:28948400-28951000	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr6:28948400-28951000	Active TSS	Brain Hippocampus Middle	brain
24	chr6:28948400-28951000	Active TSS	Fetal Brain Female	brain
25	chr6:28948400-28951000	Active TSS	Stomach Smooth Muscle	stomach
26	chr6:28948400-28951000	Active TSS	HSMMtube	muscle
27	chr6:28948400-28951800	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr6:28948600-28950000	Active TSS	Gastric	stomach
29	chr6:28948600-28950600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:28948600-28950600	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr6:28948600-28950600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:28948600-28950600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:28948600-28950600	Active TSS	Colon Smooth Muscle	Colon
34	chr6:28948600-28950600	Active TSS	Fetal Intestine Large	intestine
35	chr6:28948600-28950600	Active TSS	Stomach Mucosa	stomach
36	chr6:28948600-28950800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr6:28948600-28950800	Active TSS	H1 Cell Line	embryonic stem cell
38	chr6:28948600-28950800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:28948600-28950800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:28948600-28951000	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr6:28948600-28951000	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr6:28948600-28951000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:28948600-28951000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:28948600-28951000	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr6:28948600-28951000	Active TSS	Ovary	ovary
46	chr6:28948600-28951600	Active TSS	K562	blood
47	chr6:28948600-28954800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:28948800-28950000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:28948800-28950000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr6:28948800-28950200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links