Variant report

Variant	rs325869
Chromosome Location	chr5:41051782-41051783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10075985	0.87[CHB][hapmap]
rs1097653	0.89[ASN][1000 genomes]
rs2921174	0.81[CHB][hapmap]
rs325837	0.87[ASN][1000 genomes]
rs325861	1.00[CHB][hapmap]
rs325865	0.93[CHB][hapmap];0.94[ASN][1000 genomes]
rs325874	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs325883	0.93[CHB][hapmap];0.89[ASN][1000 genomes]
rs3805717	0.87[CHB][hapmap]
rs431544	0.81[ASN][1000 genomes]
rs4957150	0.81[CHB][hapmap]
rs609356	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs618362	0.86[ASN][1000 genomes]
rs6414892	0.81[CHB][hapmap]
rs6865420	0.87[CHB][hapmap]
rs6868654	0.81[YRI][hapmap]
rs6873877	0.87[CHB][hapmap]
rs9764586	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41050000-41052000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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