Variant report

Variant	rs3805717
Chromosome Location	chr5:41161521-41161522
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr5:41161357-41161895	ECC-1	luminal epithelium:	n/a	n/a
2	EP300	chr5:41161302-41161932	ECC-1	luminal epithelium:	n/a	chr5:41161340-41161348
3	TEAD4	chr5:41161490-41161815	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
C6	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10075985	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1097653	0.93[EUR][1000 genomes]
rs11951782	0.81[AFR][1000 genomes]
rs1423398	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1816096	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs192987	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs2921174	0.94[CHB][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap]
rs325813	0.88[AFR][1000 genomes]
rs325818	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs325822	0.81[GIH][hapmap]
rs325832	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs325834	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs325836	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs325837	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs325851	0.93[CEU][hapmap]
rs325861	0.93[CEU][hapmap];0.87[CHB][hapmap];0.86[TSI][hapmap]
rs325865	0.93[CEU][hapmap];0.80[CHB][hapmap];0.92[EUR][1000 genomes]
rs325869	0.87[CHB][hapmap]
rs325874	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs325883	0.93[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4301263	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs431544	0.84[ASN][1000 genomes]
rs4557462	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4957150	0.94[CHB][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs4957374	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609356	0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs618362	0.86[EUR][1000 genomes]
rs6414892	0.94[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap]
rs6865420	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873877	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7718610	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41153200-41169000	Weak transcription	Pancreas	Pancrea
4	chr5:41155200-41161600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:41156600-41169000	Weak transcription	Fetal Intestine Large	intestine
6	chr5:41157800-41161800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:41158800-41161600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:41159000-41181800	Weak transcription	Right Ventricle	heart
9	chr5:41159400-41162000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:41160200-41172600	Strong transcription	Liver	Liver
11	chr5:41160600-41162000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:41160800-41162400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:41161200-41162000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:41161400-41161800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:41161400-41161800	Enhancers	Fetal Kidney	kidney

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