Variant report

Variant	rs6873877
Chromosome Location	chr5:41175424-41175425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41174877..41177171-chr5:41179779..41183003,3	K562	blood:
2	chr5:41154621..41156328-chr5:41174329..41175959,2	K562	blood:

Variant related genes	Relation type
ENSG00000039537	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10075985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10076104	0.84[EUR][1000 genomes]
rs11951782	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1423398	0.84[ASN][1000 genomes]
rs1816096	0.90[ASN][1000 genomes]
rs1867539	0.81[EUR][1000 genomes]
rs2329591	0.81[EUR][1000 genomes]
rs2921174	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs325861	0.87[CHB][hapmap]
rs325865	0.80[JPT][hapmap]
rs325869	0.87[CHB][hapmap]
rs325874	0.87[CHB][hapmap]
rs325883	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs3805717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4245976	0.84[EUR][1000 genomes]
rs4279376	0.82[EUR][1000 genomes]
rs4301263	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431544	0.82[ASN][1000 genomes]
rs4557462	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957150	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4957374	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs609356	0.81[CHB][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap]
rs6414892	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs6451568	0.82[EUR][1000 genomes]
rs6865420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7718610	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41159000-41181800	Weak transcription	Right Ventricle	heart
4	chr5:41169600-41181800	Weak transcription	Ovary	ovary
5	chr5:41171800-41181600	Weak transcription	Fetal Intestine Large	intestine
6	chr5:41173400-41184000	Weak transcription	Pancreas	Pancrea
7	chr5:41175000-41178400	Genic enhancers	Liver	Liver
8	chr5:41175200-41175600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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