Variant report

Variant	rs4245976
Chromosome Location	chr5:41185361-41185362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10075985	0.94[CHB][hapmap];0.84[GIH][hapmap]
rs10076104	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11951782	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1838497	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1867539	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2028757	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2329591	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910644	0.81[GIH][hapmap]
rs2921174	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2921178	0.86[GIH][hapmap]
rs2921184	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2921185	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs325861	0.81[CHB][hapmap]
rs325869	0.81[CHB][hapmap]
rs325874	0.81[CHB][hapmap]
rs325883	0.87[CHB][hapmap]
rs3805717	0.94[CHB][hapmap];0.85[GIH][hapmap];0.81[YRI][hapmap]
rs4279376	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4301263	0.87[EUR][1000 genomes]
rs4557462	0.87[EUR][1000 genomes]
rs4957150	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs609356	0.81[CHB][hapmap]
rs6414892	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451568	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6865420	0.94[CHB][hapmap];0.86[GIH][hapmap]
rs6873877	0.91[CEU][hapmap];0.94[CHB][hapmap];0.84[EUR][1000 genomes]
rs9654391	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41181800-41186400	Enhancers	Stomach Mucosa	stomach
2	chr5:41182000-41185600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:41183400-41192200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:41184200-41185600	Weak transcription	Adipose Nuclei	Adipose
5	chr5:41184200-41186000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:41184200-41186000	Weak transcription	Ovary	ovary
7	chr5:41184800-41195200	Weak transcription	Pancreas	Pancrea
8	chr5:41185000-41186400	Active TSS	Right Atrium	heart
9	chr5:41185000-41187600	Strong transcription	Liver	Liver
10	chr5:41185200-41186400	Weak transcription	Fetal Intestine Large	intestine
11	chr5:41185200-41203200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links