Variant report

Variant	rs4279376
Chromosome Location	chr5:41194520-41194521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10075985	0.94[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap]
rs10076104	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951782	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838497	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1867539	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2028757	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2329591	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2921174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2921184	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2921185	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325861	0.81[CHB][hapmap]
rs325869	0.81[CHB][hapmap]
rs325874	0.81[CHB][hapmap]
rs325883	0.87[CHB][hapmap]
rs3805717	0.94[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap]
rs4245976	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4301263	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4557462	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4957150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609356	0.82[YRI][hapmap]
rs6414892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451568	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865420	0.94[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap]
rs6873877	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.82[EUR][1000 genomes]
rs9654391	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41184800-41195200	Weak transcription	Pancreas	Pancrea
2	chr5:41185200-41203200	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41186600-41195000	Weak transcription	Fetal Intestine Large	intestine
4	chr5:41192800-41196000	Enhancers	Stomach Mucosa	stomach
5	chr5:41193000-41194600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:41193000-41195200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr5:41193200-41194600	Enhancers	Adipose Nuclei	Adipose
8	chr5:41193400-41194600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:41193600-41194600	Enhancers	Fetal Heart	heart
10	chr5:41194200-41195800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:41194400-41194600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr5:41194400-41194800	Enhancers	Liver	Liver

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