Variant report

Variant	rs609356
Chromosome Location	chr5:41056685-41056686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41052154..41054968-chr5:41055599..41057506,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10075985	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1097653	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1423398	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1816096	0.80[EUR][1000 genomes]
rs2921174	0.81[CHB][hapmap];0.93[YRI][hapmap]
rs325837	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs325851	0.88[CEU][hapmap]
rs325861	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs325865	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs325869	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs325874	1.00[CHB][hapmap]
rs325883	0.88[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805717	0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs431544	0.88[ASN][1000 genomes]
rs4957150	0.81[CHB][hapmap];0.93[YRI][hapmap]
rs4957374	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs618362	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6414892	0.82[YRI][hapmap]
rs6865420	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6873877	0.81[CHB][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap]
rs6898193	0.81[EUR][1000 genomes]
rs7718610	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41056600-41057200	Enhancers	Ovary	ovary

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