Variant report
| Variant | rs325874 |
|---|---|
| Chromosome Location | chr5:41054934-41054935 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:41052154..41054968-chr5:41055599..41057506,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10075985 | 0.87[CHB][hapmap] |
| rs1097653 | 0.89[ASN][1000 genomes] |
| rs2921174 | 0.81[CHB][hapmap] |
| rs325837 | 0.87[ASN][1000 genomes] |
| rs325861 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap] |
| rs325865 | 0.93[CHB][hapmap];0.94[ASN][1000 genomes] |
| rs325869 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs325883 | 0.93[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];0.89[ASN][1000 genomes] |
| rs3805717 | 0.87[CHB][hapmap];0.81[CHD][hapmap] |
| rs431544 | 0.81[ASN][1000 genomes] |
| rs4957150 | 0.81[CHB][hapmap] |
| rs609356 | 1.00[CHB][hapmap];0.92[ASN][1000 genomes] |
| rs618362 | 0.86[ASN][1000 genomes] |
| rs6414892 | 0.81[CHB][hapmap] |
| rs6865420 | 0.87[CHB][hapmap] |
| rs6868654 | 0.81[YRI][hapmap] |
| rs6873877 | 0.87[CHB][hapmap] |
| rs9764586 | 0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830268 | chr5:40897361-41138366 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv526193 | chr5:41053923-41054934 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs325874 | TOR1AIP2 | trans | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
