Variant report

Variant	rs325861
Chromosome Location	chr5:41048388-41048389
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10075985	0.93[CEU][hapmap];0.87[CHB][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs1097653	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1423398	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs192987	0.87[CEU][hapmap];0.91[TSI][hapmap]
rs2921174	0.81[CHB][hapmap]
rs325818	0.87[CEU][hapmap];0.91[TSI][hapmap]
rs325822	0.82[ASW][hapmap];0.85[CEU][hapmap];0.90[TSI][hapmap]
rs325832	0.87[CEU][hapmap];0.91[TSI][hapmap]
rs325834	0.87[CEU][hapmap];0.89[TSI][hapmap]
rs325836	0.87[CEU][hapmap];0.91[TSI][hapmap]
rs325837	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs325851	1.00[CEU][hapmap]
rs325865	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs325869	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs325874	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap]
rs325883	0.84[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805717	0.93[CEU][hapmap];0.87[CHB][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs431544	0.87[ASN][1000 genomes]
rs4957150	0.81[CHB][hapmap]
rs4957374	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs609356	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs618362	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6414892	0.81[CHB][hapmap]
rs6865420	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs6873877	0.87[CHB][hapmap]
rs6898193	0.84[EUR][1000 genomes]
rs7718610	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs325861	TOR1AIP2	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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