Variant report

Variant	rs4957374
Chromosome Location	chr5:41154150-41154151
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10075985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1097653	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1423398	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1816096	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs192987	0.81[CEU][hapmap]
rs2921174	0.94[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs325813	0.91[AFR][1000 genomes]
rs325818	0.81[CEU][hapmap]
rs325832	0.81[CEU][hapmap]
rs325834	0.81[CEU][hapmap]
rs325836	0.81[CEU][hapmap]
rs325837	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs325851	0.93[CEU][hapmap]
rs325861	0.93[CEU][hapmap];0.87[CHB][hapmap]
rs325865	0.93[CEU][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs325869	0.87[CHB][hapmap]
rs325874	0.87[CHB][hapmap]
rs325883	0.93[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3805717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301263	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs431544	0.84[ASN][1000 genomes]
rs4557462	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4957150	0.94[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs609356	0.88[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs618362	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6414892	0.88[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap]
rs6865420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873877	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7718610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41141600-41156400	Strong transcription	Liver	Liver
3	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
4	chr5:41152400-41156600	Strong transcription	Fetal Intestine Large	intestine
5	chr5:41153200-41169000	Weak transcription	Pancreas	Pancrea
6	chr5:41153400-41155000	Enhancers	Adipose Nuclei	Adipose
7	chr5:41154000-41156200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links