Variant report

Variant	rs6451568
Chromosome Location	chr5:41198224-41198225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10075985	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs10076104	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951782	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838497	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1867539	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2028757	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2329591	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2921174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2921184	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2921185	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325861	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs325865	1.00[YRI][hapmap]
rs325869	0.81[CHB][hapmap]
rs325874	0.81[CHB][hapmap]
rs325883	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs3805717	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs4245976	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4279376	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301263	0.84[EUR][1000 genomes]
rs4557462	0.84[EUR][1000 genomes]
rs4957150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6414892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865420	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs6873877	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs9654391	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965601	chr5:41198137-41204629	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41185200-41203200	Weak transcription	Fetal Intestine Small	intestine
2	chr5:41194600-41201800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:41195600-41199000	Weak transcription	Left Ventricle	heart
4	chr5:41195600-41205400	Weak transcription	Pancreas	Pancrea
5	chr5:41195800-41201400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:41196000-41200400	Genic enhancers	Liver	Liver
7	chr5:41196000-41201200	Weak transcription	Fetal Intestine Large	intestine

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