Variant report

Variant	rs34018973
Chromosome Location	chr3:145896374-145896375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145889043..145893047-chr3:145893361..145897417,4	K562	blood:
2	chr3:145877350..145881117-chr3:145895717..145897462,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152952	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11917080	1.00[AFR][1000 genomes]
rs55679267	0.84[AFR][1000 genomes]
rs56393425	0.84[AFR][1000 genomes]
rs56683042	0.84[AFR][1000 genomes]
rs57085945	0.84[AFR][1000 genomes]
rs58360710	0.84[AFR][1000 genomes]
rs58437138	0.84[AFR][1000 genomes]
rs61435456	0.84[AFR][1000 genomes]
rs73865307	0.84[AFR][1000 genomes]
rs73865310	0.84[AFR][1000 genomes]
rs73865315	0.84[AFR][1000 genomes]
rs73865317	0.80[AFR][1000 genomes]
rs73865321	0.84[AFR][1000 genomes]
rs73865322	0.84[AFR][1000 genomes]
rs73865323	0.84[AFR][1000 genomes]
rs73865325	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1011146	chr3:145859022-145911429	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145880800-145914400	Weak transcription	Left Ventricle	heart
2	chr3:145883000-145913000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:145884000-145903400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:145884800-145910800	Weak transcription	Liver	Liver
5	chr3:145885000-145908000	Weak transcription	Aorta	Aorta
6	chr3:145885600-145907800	Weak transcription	Ovary	ovary
7	chr3:145888600-145902000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:145892800-145896400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:145895200-145898000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:145895200-145902000	Weak transcription	A549	lung
11	chr3:145895400-145896400	Enhancers	Stomach Smooth Muscle	stomach
12	chr3:145895400-145896600	Enhancers	Colon Smooth Muscle	Colon
13	chr3:145895600-145896400	Enhancers	Rectal Smooth Muscle	rectum
14	chr3:145895600-145897400	Enhancers	HUVEC	blood vessel
15	chr3:145895600-145902000	Weak transcription	HSMM	muscle
16	chr3:145895800-145897000	Enhancers	Fetal Stomach	stomach
17	chr3:145895800-145898400	Weak transcription	Osteobl	bone
18	chr3:145895800-145918200	Weak transcription	NHDF-Ad	bronchial
19	chr3:145896000-145896400	Enhancers	Adipose Nuclei	Adipose
20	chr3:145896000-145898400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:145896000-145899000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:145896000-145907800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:145896000-145910600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:145896200-145896400	Enhancers	Fetal Lung	lung
25	chr3:145896200-145896600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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