Variant report

Variant	rs58437138
Chromosome Location	chr3:145836779-145836780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:145829569..145840903-chr3:145873254..145880972,31	MCF-7	breast:
2	chr3:145834823..145837112-chr3:145844959..145847874,2	MCF-7	breast:
3	chr3:145835695..145838592-chr3:145842329..145844265,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152952	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11917080	0.84[AFR][1000 genomes]
rs11927032	0.90[AFR][1000 genomes]
rs34018973	0.84[AFR][1000 genomes]
rs55679267	1.00[AFR][1000 genomes]
rs56064623	0.91[AFR][1000 genomes]
rs56393425	1.00[AFR][1000 genomes]
rs56683042	1.00[AFR][1000 genomes]
rs57085945	1.00[AFR][1000 genomes]
rs58360710	1.00[AFR][1000 genomes]
rs61435456	1.00[AFR][1000 genomes]
rs73865307	1.00[AFR][1000 genomes]
rs73865310	1.00[AFR][1000 genomes]
rs73865315	1.00[AFR][1000 genomes]
rs73865317	0.95[AFR][1000 genomes]
rs73865321	1.00[AFR][1000 genomes]
rs73865322	1.00[AFR][1000 genomes]
rs73865323	1.00[AFR][1000 genomes]
rs73865325	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145782800-145843200	Weak transcription	Pancreas	Pancrea
2	chr3:145784600-145848800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:145790400-145843200	Weak transcription	Right Ventricle	heart
4	chr3:145798800-145839200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:145810400-145849800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:145810800-145851200	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:145812200-145839200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:145814200-145841000	Weak transcription	Lung	lung
9	chr3:145816000-145836800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:145816400-145842000	Weak transcription	Colonic Mucosa	Colon
11	chr3:145819800-145841800	Weak transcription	Fetal Heart	heart
12	chr3:145819800-145849200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:145821000-145849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:145822800-145836800	Weak transcription	Ovary	ovary
15	chr3:145824600-145839600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:145827000-145855200	Weak transcription	Aorta	Aorta
17	chr3:145827400-145840200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:145827400-145842000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:145828600-145837200	Strong transcription	HSMM	muscle
20	chr3:145831400-145848400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:145832000-145836800	Weak transcription	Placenta	Placenta
22	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:145832200-145836800	Weak transcription	Left Ventricle	heart
24	chr3:145832200-145838400	Weak transcription	Fetal Stomach	stomach
25	chr3:145832600-145848400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:145833000-145837400	Strong transcription	HUVEC	blood vessel
27	chr3:145833200-145837200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:145833600-145843200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:145834200-145836800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:145834200-145837200	Strong transcription	A549	lung
31	chr3:145834200-145851200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:145834400-145839000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:145834400-145839600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:145834400-145851400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:145834600-145837200	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:145834600-145838800	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:145834600-145841200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr3:145834600-145852800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:145835000-145836800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:145835000-145837200	Genic enhancers	Muscle Satellite Cultured Cells	--
41	chr3:145835000-145837600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:145835200-145836800	Enhancers	NHLF	lung
43	chr3:145835200-145837000	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:145835200-145838400	Weak transcription	Spleen	Spleen
45	chr3:145835200-145851200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:145835200-145852200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr3:145835400-145837200	Strong transcription	Fetal Intestine Large	intestine
48	chr3:145835400-145837200	Genic enhancers	Osteobl	bone
49	chr3:145835600-145836800	Weak transcription	Esophagus	oesophagus
50	chr3:145835600-145837000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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