Variant report

Variant	rs73865315
Chromosome Location	chr3:145849618-145849619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:145786382..145788003-chr3:145848054..145850516,2	MCF-7	breast:
2	chr3:145847747..145850479-chr3:145851136..145852882,2	MCF-7	breast:
3	chr1:156706457..156707966-chr3:145848745..145851491,2	MCF-7	breast:
4	chr3:145848591..145850350-chr3:145877768..145879975,2	MCF-7	breast:
5	chr3:145841734..145843545-chr3:145847343..145850022,2	MCF-7	breast:
6	chr3:145848518..145850304-chr3:145857520..145859905,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240032	Chromatin interaction
ENSG00000152952	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11917080	0.84[AFR][1000 genomes]
rs11927032	0.90[AFR][1000 genomes]
rs34018973	0.84[AFR][1000 genomes]
rs55679267	1.00[AFR][1000 genomes]
rs56064623	0.91[AFR][1000 genomes]
rs56393425	1.00[AFR][1000 genomes]
rs56683042	1.00[AFR][1000 genomes]
rs57085945	1.00[AFR][1000 genomes]
rs58360710	1.00[AFR][1000 genomes]
rs58437138	1.00[AFR][1000 genomes]
rs61435456	1.00[AFR][1000 genomes]
rs73865307	1.00[AFR][1000 genomes]
rs73865310	1.00[AFR][1000 genomes]
rs73865317	0.95[AFR][1000 genomes]
rs73865321	1.00[AFR][1000 genomes]
rs73865322	1.00[AFR][1000 genomes]
rs73865323	1.00[AFR][1000 genomes]
rs73865325	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145810400-145849800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:145810800-145851200	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:145821000-145849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:145827000-145855200	Weak transcription	Aorta	Aorta
5	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:145834200-145851200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:145834400-145851400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:145834600-145852800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:145835200-145851200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:145835200-145852200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:145835600-145851200	Weak transcription	Fetal Kidney	kidney
12	chr3:145835800-145874000	Weak transcription	Psoas Muscle	Psoas
13	chr3:145836000-145852400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr3:145837000-145852400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:145837200-145851200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:145839800-145851400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:145840000-145852400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:145840200-145849800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:145840400-145874000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:145842000-145849800	Weak transcription	HMEC	breast
21	chr3:145843400-145851200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:145843600-145855200	Weak transcription	Left Ventricle	heart
23	chr3:145843600-145861200	Weak transcription	Right Ventricle	heart
24	chr3:145844000-145851200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:145844600-145856000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:145844600-145860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:145845200-145850600	Enhancers	Colon Smooth Muscle	Colon
28	chr3:145845600-145849800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:145847200-145849800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:145847600-145851200	Weak transcription	Adipose Nuclei	Adipose
31	chr3:145847800-145851200	Weak transcription	Fetal Lung	lung
32	chr3:145847800-145851600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr3:145848000-145850000	Genic enhancers	HepG2	liver
34	chr3:145848000-145856800	Weak transcription	Fetal Intestine Small	intestine
35	chr3:145848400-145850200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:145848400-145851600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:145848600-145849800	Weak transcription	Liver	Liver
38	chr3:145848600-145850200	Enhancers	Stomach Smooth Muscle	stomach
39	chr3:145848600-145850200	Enhancers	NHLF	lung
40	chr3:145848800-145850000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:145848800-145850400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:145848800-145850600	Enhancers	NH-A	brain
43	chr3:145849000-145850400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:145849000-145851200	Weak transcription	Fetal Intestine Large	intestine
45	chr3:145849000-145851200	Weak transcription	Right Atrium	heart
46	chr3:145849000-145851200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr3:145849200-145849800	Genic enhancers	A549	lung
48	chr3:145849200-145850000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:145849200-145850000	Enhancers	Placenta Amnion	Placenta Amnion
50	chr3:145849200-145850000	Flanking Active TSS	Osteobl	bone

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