Variant report

Variant	rs73865325
Chromosome Location	chr3:145859230-145859231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145848518..145850304-chr3:145857520..145859905,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11917080	0.84[AFR][1000 genomes]
rs11927032	0.90[AFR][1000 genomes]
rs34018973	0.84[AFR][1000 genomes]
rs55679267	1.00[AFR][1000 genomes]
rs56064623	0.91[AFR][1000 genomes]
rs56393425	1.00[AFR][1000 genomes]
rs56683042	1.00[AFR][1000 genomes]
rs57085945	1.00[AFR][1000 genomes]
rs58360710	1.00[AFR][1000 genomes]
rs58437138	1.00[AFR][1000 genomes]
rs61435456	1.00[AFR][1000 genomes]
rs73865307	1.00[AFR][1000 genomes]
rs73865310	1.00[AFR][1000 genomes]
rs73865315	1.00[AFR][1000 genomes]
rs73865317	0.95[AFR][1000 genomes]
rs73865321	1.00[AFR][1000 genomes]
rs73865322	1.00[AFR][1000 genomes]
rs73865323	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1011146	chr3:145859022-145911429	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:145835800-145874000	Weak transcription	Psoas Muscle	Psoas
3	chr3:145840400-145874000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:145843600-145861200	Weak transcription	Right Ventricle	heart
5	chr3:145844600-145860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:145850400-145860200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:145850400-145864400	Weak transcription	HMEC	breast
8	chr3:145851600-145860400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:145851600-145864200	Weak transcription	Right Atrium	heart
10	chr3:145852600-145860400	Weak transcription	NH-A	brain
11	chr3:145852800-145860600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:145853200-145860400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:145853200-145861600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:145855400-145860400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:145855800-145862000	Enhancers	Fetal Stomach	stomach
16	chr3:145856000-145861400	Enhancers	Rectal Smooth Muscle	rectum
17	chr3:145856200-145860200	Enhancers	Colon Smooth Muscle	Colon
18	chr3:145856200-145862200	Enhancers	Fetal Heart	heart
19	chr3:145856400-145861200	Weak transcription	HepG2	liver
20	chr3:145856400-145864200	Weak transcription	Left Ventricle	heart
21	chr3:145856400-145875800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:145856800-145860400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr3:145857000-145859400	Enhancers	Liver	Liver
24	chr3:145857400-145860000	Enhancers	Osteobl	bone
25	chr3:145857800-145860600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:145858000-145860200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:145858000-145860200	Weak transcription	HSMMtube	muscle
28	chr3:145858000-145860200	Weak transcription	NHDF-Ad	bronchial
29	chr3:145858000-145860400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:145858000-145860400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:145858000-145860400	Weak transcription	Brain Substantia Nigra	brain
32	chr3:145858000-145861800	Enhancers	A549	lung
33	chr3:145858200-145860200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr3:145858200-145860200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:145858200-145860200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:145858200-145860200	Weak transcription	Brain Hippocampus Middle	brain
37	chr3:145858200-145860200	Weak transcription	Ovary	ovary
38	chr3:145858200-145860200	Weak transcription	HSMM	muscle
39	chr3:145858200-145860200	Weak transcription	HUVEC	blood vessel
40	chr3:145858200-145860400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:145858200-145860400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:145858200-145860400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:145858200-145860400	Weak transcription	Fetal Kidney	kidney
44	chr3:145858200-145860600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:145858400-145860000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr3:145858400-145860400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr3:145858400-145860400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:145858600-145860200	Weak transcription	Fetal Lung	lung
49	chr3:145858600-145860400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:145858600-145860600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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