Variant report

Variant	rs73865307
Chromosome Location	chr3:145829581-145829582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145828227..145830460-chr3:145877595..145880435,3	MCF-7	breast:
2	chr3:145829569..145840903-chr3:145873254..145880972,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152952	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11917080	0.84[AFR][1000 genomes]
rs11927032	0.90[AFR][1000 genomes]
rs34018973	0.84[AFR][1000 genomes]
rs55679267	1.00[AFR][1000 genomes]
rs56064623	0.91[AFR][1000 genomes]
rs56393425	1.00[AFR][1000 genomes]
rs56683042	1.00[AFR][1000 genomes]
rs57085945	1.00[AFR][1000 genomes]
rs58360710	1.00[AFR][1000 genomes]
rs58437138	1.00[AFR][1000 genomes]
rs61435456	1.00[AFR][1000 genomes]
rs73865310	1.00[AFR][1000 genomes]
rs73865315	1.00[AFR][1000 genomes]
rs73865317	0.95[AFR][1000 genomes]
rs73865321	1.00[AFR][1000 genomes]
rs73865322	1.00[AFR][1000 genomes]
rs73865323	1.00[AFR][1000 genomes]
rs73865325	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145781800-145831800	Weak transcription	Psoas Muscle	Psoas
2	chr3:145782800-145843200	Weak transcription	Pancreas	Pancrea
3	chr3:145784600-145848800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:145789200-145830800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:145790400-145843200	Weak transcription	Right Ventricle	heart
6	chr3:145791600-145833800	Weak transcription	NHDF-Ad	bronchial
7	chr3:145798800-145839200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:145808600-145833000	Weak transcription	Fetal Lung	lung
9	chr3:145810400-145830800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:145810400-145849800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:145810800-145851200	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:145812200-145839200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:145814200-145841000	Weak transcription	Lung	lung
14	chr3:145815800-145830000	Strong transcription	Osteobl	bone
15	chr3:145816000-145836800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:145816400-145842000	Weak transcription	Colonic Mucosa	Colon
17	chr3:145818000-145829800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:145818800-145831600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:145819800-145831200	Weak transcription	Fetal Stomach	stomach
20	chr3:145819800-145841800	Weak transcription	Fetal Heart	heart
21	chr3:145819800-145849200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:145820000-145834000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:145820600-145830000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr3:145821000-145830800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:145821000-145831600	Weak transcription	Placenta	Placenta
26	chr3:145821000-145849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:145821200-145835200	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:145821200-145835400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:145822000-145829600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:145822200-145833800	Weak transcription	Fetal Kidney	kidney
31	chr3:145822800-145836800	Weak transcription	Ovary	ovary
32	chr3:145823000-145831800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:145823200-145832000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr3:145823800-145830800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:145824200-145830000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:145824200-145831200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:145824600-145835000	Weak transcription	HMEC	breast
38	chr3:145824600-145839600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:145825000-145835400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:145825200-145831200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:145826000-145830200	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr3:145826800-145831400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr3:145826800-145833200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:145827000-145831400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:145827000-145831400	Weak transcription	Left Ventricle	heart
46	chr3:145827000-145855200	Weak transcription	Aorta	Aorta
47	chr3:145827400-145831800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:145827400-145833600	Weak transcription	Fetal Intestine Large	intestine
49	chr3:145827400-145836600	Weak transcription	Adipose Nuclei	Adipose
50	chr3:145827400-145836600	Weak transcription	HSMMtube	muscle

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