Variant report

Variant	rs34028441
Chromosome Location	chr10:46129958-46129959
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:46122816..46124918-chr10:46127919..46130854,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12762375	1.00[AMR][1000 genomes]
rs12772724	1.00[AMR][1000 genomes]
rs12776062	1.00[AMR][1000 genomes]
rs12782256	1.00[AMR][1000 genomes]
rs12784527	1.00[AMR][1000 genomes]
rs13134	1.00[AMR][1000 genomes]
rs17451516	1.00[AMR][1000 genomes]
rs17451757	1.00[AMR][1000 genomes]
rs17452587	1.00[AMR][1000 genomes]
rs17523660	1.00[AMR][1000 genomes]
rs34063374	1.00[AMR][1000 genomes]
rs34208634	1.00[AMR][1000 genomes]
rs34349618	1.00[AMR][1000 genomes]
rs34570485	1.00[AMR][1000 genomes]
rs34640551	1.00[AMR][1000 genomes]
rs34681532	1.00[AMR][1000 genomes]
rs34744856	1.00[AMR][1000 genomes]
rs34763590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34831109	1.00[AMR][1000 genomes]
rs34971823	1.00[AMR][1000 genomes]
rs35098689	1.00[AMR][1000 genomes]
rs35124937	1.00[AMR][1000 genomes]
rs35468901	1.00[AMR][1000 genomes]
rs35479649	1.00[AMR][1000 genomes]
rs35489926	1.00[AMR][1000 genomes]
rs35490739	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35517795	1.00[AMR][1000 genomes]
rs35599399	1.00[AMR][1000 genomes]
rs35911307	1.00[AMR][1000 genomes]
rs4073658	1.00[AMR][1000 genomes]
rs71494784	1.00[AMR][1000 genomes]
rs71494801	1.00[AMR][1000 genomes]
rs71496616	1.00[AMR][1000 genomes]
rs9422649	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1050880	chr10:46091441-46160597	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv540588	chr10:46091441-46160597	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv947911	chr10:46116371-46136816	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46090600-46167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:46096200-46142000	Weak transcription	Brain Anterior Caudate	brain
3	chr10:46098200-46153400	Weak transcription	HSMM	muscle
4	chr10:46100200-46142600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:46103400-46130600	Weak transcription	Fetal Brain Male	brain
6	chr10:46103400-46142200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr10:46103600-46132600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:46103800-46134600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:46104400-46151400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:46105600-46141600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:46106400-46137000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:46106400-46141400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:46106400-46142000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:46106800-46142000	Weak transcription	Fetal Kidney	kidney
15	chr10:46106800-46146400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:46107800-46141800	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:46107800-46142000	Weak transcription	Esophagus	oesophagus
18	chr10:46108000-46155800	Weak transcription	Brain Angular Gyrus	brain
19	chr10:46108200-46142000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:46108400-46142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:46108400-46149400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:46108400-46167000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:46108600-46149200	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:46108600-46155400	Weak transcription	Fetal Intestine Small	intestine
25	chr10:46108800-46142000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:46110200-46153800	Weak transcription	NH-A	brain
27	chr10:46110800-46156800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:46112200-46152400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:46118800-46142400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:46119800-46137000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:46119800-46148200	Weak transcription	Colonic Mucosa	Colon
32	chr10:46120000-46157800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:46120200-46148400	Weak transcription	Small Intestine	intestine
34	chr10:46122200-46142000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:46122200-46154600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:46122200-46157200	Weak transcription	Gastric	stomach
37	chr10:46122400-46130600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:46122400-46131800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr10:46122400-46134000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:46122400-46137200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:46122400-46141800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:46122400-46142000	Weak transcription	Fetal Lung	lung
43	chr10:46122400-46142200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:46122400-46149000	Weak transcription	Brain Substantia Nigra	brain
45	chr10:46122400-46156400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:46122600-46133400	Weak transcription	Dnd41	blood
47	chr10:46122600-46133400	Weak transcription	GM12878-XiMat	blood
48	chr10:46122600-46133400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr10:46122600-46133600	Weak transcription	Fetal Stomach	stomach
50	chr10:46122600-46133800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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