Variant report

Variant	rs35490739
Chromosome Location	chr10:46088129-46088130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12762375	1.00[AMR][1000 genomes]
rs12772724	1.00[AMR][1000 genomes]
rs12776062	1.00[AMR][1000 genomes]
rs12782256	1.00[AMR][1000 genomes]
rs12784527	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13134	1.00[AMR][1000 genomes]
rs17157883	0.84[EUR][1000 genomes]
rs17451516	1.00[AMR][1000 genomes]
rs17451757	1.00[AMR][1000 genomes]
rs17452587	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17523660	1.00[AMR][1000 genomes]
rs34028441	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34063374	1.00[AMR][1000 genomes]
rs34208634	1.00[AMR][1000 genomes]
rs34349618	1.00[AMR][1000 genomes]
rs34570485	1.00[AMR][1000 genomes]
rs34640551	1.00[AMR][1000 genomes]
rs34681532	1.00[AMR][1000 genomes]
rs34744856	1.00[AMR][1000 genomes]
rs34763590	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34831109	1.00[AMR][1000 genomes]
rs34971823	1.00[AMR][1000 genomes]
rs35098689	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35124937	1.00[AMR][1000 genomes]
rs35468901	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35479649	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35489926	1.00[AMR][1000 genomes]
rs35517795	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35599399	1.00[AMR][1000 genomes]
rs35911307	1.00[AMR][1000 genomes]
rs4073658	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71494784	1.00[AMR][1000 genomes]
rs71494801	1.00[AMR][1000 genomes]
rs71496616	1.00[AMR][1000 genomes]
rs9422649	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv2761592	chr10:46072872-46090202	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46076800-46089000	Weak transcription	Right Ventricle	heart
2	chr10:46077600-46088400	Weak transcription	Osteobl	bone
3	chr10:46077800-46088400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:46077800-46088400	Weak transcription	NHLF	lung
5	chr10:46080400-46088800	Weak transcription	A549	lung
6	chr10:46081600-46089000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:46082400-46088200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:46082800-46088400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:46083400-46088800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:46083400-46088800	Weak transcription	Aorta	Aorta
11	chr10:46084000-46088400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:46084000-46088800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:46084000-46088800	Weak transcription	Fetal Intestine Small	intestine
14	chr10:46084400-46088400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:46084400-46088800	Weak transcription	Fetal Stomach	stomach
16	chr10:46084800-46088400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:46084800-46088600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:46085400-46089400	Weak transcription	Placenta	Placenta
19	chr10:46085800-46088400	Weak transcription	Fetal Brain Female	brain
20	chr10:46085800-46088800	Weak transcription	Fetal Kidney	kidney
21	chr10:46086000-46088400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:46086000-46088600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:46086000-46088800	Weak transcription	HSMMtube	muscle
24	chr10:46086000-46089000	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:46086000-46089200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:46086200-46089000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:46086400-46088400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr10:46086400-46089000	Weak transcription	Pancreas	Pancrea
29	chr10:46086800-46088400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:46086800-46088600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr10:46086800-46089800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:46087000-46088200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:46087000-46088400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:46087000-46089000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr10:46087000-46089000	Weak transcription	Left Ventricle	heart
36	chr10:46087000-46089600	Weak transcription	Esophagus	oesophagus
37	chr10:46087000-46090800	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr10:46087200-46088400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr10:46087200-46088400	Enhancers	Ovary	ovary
40	chr10:46087200-46088400	Enhancers	Rectal Smooth Muscle	rectum
41	chr10:46087200-46088400	Enhancers	Dnd41	blood
42	chr10:46087200-46088600	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr10:46087200-46088600	Enhancers	Liver	Liver
44	chr10:46087200-46088600	Enhancers	HepG2	liver
45	chr10:46087200-46088800	Enhancers	Primary B cells from peripheral blood	blood
46	chr10:46087200-46088800	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr10:46087200-46088800	Active TSS	GM12878-XiMat	blood
48	chr10:46087200-46089000	Weak transcription	Stomach Mucosa	stomach
49	chr10:46087400-46088400	Weak transcription	Right Atrium	heart
50	chr10:46087400-46088800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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