Variant report

Variant	rs35098689
Chromosome Location	chr10:46062486-46062487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12266963	0.84[EUR][1000 genomes]
rs12762375	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12772724	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12773979	0.84[EUR][1000 genomes]
rs12774534	0.84[EUR][1000 genomes]
rs12776062	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12781248	0.84[EUR][1000 genomes]
rs12782256	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12783037	0.84[EUR][1000 genomes]
rs12784527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13134	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17157883	1.00[EUR][1000 genomes]
rs17451516	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17451757	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17452587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17523660	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34028441	1.00[AMR][1000 genomes]
rs34063374	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34208634	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34349618	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34371883	0.84[EUR][1000 genomes]
rs34445001	0.84[EUR][1000 genomes]
rs34570485	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34640551	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34681532	1.00[AMR][1000 genomes]
rs34744856	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34763590	1.00[AMR][1000 genomes]
rs34831109	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34971823	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35124937	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35468901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35479649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35489926	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35490739	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35517795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35599399	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35911307	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4073658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494783	0.84[EUR][1000 genomes]
rs71494784	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71494801	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71496616	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9422649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv895111	chr10:45989745-46071900	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1041417	chr10:46021181-46088061	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv528750	chr10:46024620-46076235	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1052233	chr10:46024620-46088061	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1047117	chr10:46027942-46075946	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46014400-46070000	Weak transcription	Psoas Muscle	Psoas
2	chr10:46028800-46069200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:46042000-46062600	Weak transcription	Aorta	Aorta
4	chr10:46047000-46076400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:46049400-46065200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:46054200-46075600	Weak transcription	Primary T cells from cord blood	blood
7	chr10:46054200-46075800	Weak transcription	Right Atrium	heart
8	chr10:46054400-46067400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:46054400-46073400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:46055600-46069400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:46055600-46073600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:46056200-46064400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:46056200-46069400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:46056200-46075000	Weak transcription	Primary B cells from cord blood	blood
15	chr10:46056200-46075200	Weak transcription	Thymus	Thymus
16	chr10:46056400-46069400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:46056400-46073400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:46058200-46076200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:46058400-46069800	Weak transcription	K562	blood
20	chr10:46060200-46063000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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