Variant report

Variant	rs17157883
Chromosome Location	chr10:46015706-46015707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:46013794..46015809-chr10:46017694..46020673,2	K562	blood:
2	chr10:46013794..46016102-chr10:46018304..46020673,2	K562	blood:
3	chr10:46015623..46016577-chr10:46167502..46168534,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172671	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12266963	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12762375	0.84[EUR][1000 genomes]
rs12765209	1.00[ASN][1000 genomes]
rs12772724	0.84[EUR][1000 genomes]
rs12773979	0.84[EUR][1000 genomes]
rs12774534	0.84[EUR][1000 genomes]
rs12776062	0.84[EUR][1000 genomes]
rs12781248	0.84[EUR][1000 genomes]
rs12782256	0.84[EUR][1000 genomes]
rs12783037	0.84[EUR][1000 genomes]
rs12784527	1.00[EUR][1000 genomes]
rs13134	0.84[EUR][1000 genomes]
rs17157784	0.90[ASN][1000 genomes]
rs17451516	0.84[EUR][1000 genomes]
rs17451757	0.84[EUR][1000 genomes]
rs17452587	1.00[EUR][1000 genomes]
rs17523660	0.84[EUR][1000 genomes]
rs2082109	0.86[ASN][1000 genomes]
rs2082110	0.86[ASN][1000 genomes]
rs2129644	1.00[ASN][1000 genomes]
rs2306814	1.00[ASN][1000 genomes]
rs34063374	0.84[EUR][1000 genomes]
rs34208634	0.84[EUR][1000 genomes]
rs34349618	0.84[EUR][1000 genomes]
rs34371883	0.84[EUR][1000 genomes]
rs34445001	0.84[EUR][1000 genomes]
rs34570485	0.84[EUR][1000 genomes]
rs34640551	0.84[EUR][1000 genomes]
rs34744856	0.84[EUR][1000 genomes]
rs34831109	0.84[EUR][1000 genomes]
rs34971823	0.84[EUR][1000 genomes]
rs35098689	1.00[EUR][1000 genomes]
rs35124937	0.84[EUR][1000 genomes]
rs35468901	1.00[EUR][1000 genomes]
rs35479649	1.00[EUR][1000 genomes]
rs35489926	0.84[EUR][1000 genomes]
rs35490739	0.84[EUR][1000 genomes]
rs35517795	1.00[EUR][1000 genomes]
rs35599399	0.84[EUR][1000 genomes]
rs35911307	0.84[EUR][1000 genomes]
rs3740110	1.00[ASN][1000 genomes]
rs3780902	0.81[ASN][1000 genomes]
rs3780904	0.90[ASN][1000 genomes]
rs3802547	0.95[ASN][1000 genomes]
rs3824614	0.90[ASN][1000 genomes]
rs4073658	1.00[EUR][1000 genomes]
rs41426046	0.97[ASN][1000 genomes]
rs41519248	1.00[ASN][1000 genomes]
rs59317220	0.90[ASN][1000 genomes]
rs71494783	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71494784	0.84[EUR][1000 genomes]
rs71494801	0.84[EUR][1000 genomes]
rs71496616	0.85[EUR][1000 genomes]
rs73283191	0.81[ASN][1000 genomes]
rs73283196	0.81[ASN][1000 genomes]
rs74130824	1.00[ASN][1000 genomes]
rs9422649	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv895111	chr10:45989745-46071900	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	esv3451057	chr10:46015605-46015780	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45999000-46025600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:46000800-46019800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:46005000-46025200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:46005400-46029800	Weak transcription	Fetal Kidney	kidney
5	chr10:46007600-46021600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:46007800-46027400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:46008400-46027200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:46008800-46021800	Weak transcription	Spleen	Spleen
9	chr10:46009000-46021000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:46009400-46044400	Weak transcription	Thymus	Thymus
11	chr10:46010000-46021600	Weak transcription	Right Atrium	heart
12	chr10:46010000-46027800	Weak transcription	Lung	lung
13	chr10:46010000-46056000	Weak transcription	Esophagus	oesophagus
14	chr10:46010200-46027200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:46010200-46028800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:46010800-46021600	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:46010800-46025600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:46011000-46025400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:46011200-46019200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:46011400-46021600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:46011400-46027200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:46011600-46030200	Weak transcription	HepG2	liver
23	chr10:46011800-46021600	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:46013200-46027400	Weak transcription	Left Ventricle	heart
25	chr10:46014000-46019200	Weak transcription	Primary T cells from cord blood	blood
26	chr10:46014000-46027400	Weak transcription	Fetal Intestine Small	intestine
27	chr10:46014200-46016800	Weak transcription	K562	blood
28	chr10:46014400-46070000	Weak transcription	Psoas Muscle	Psoas
29	chr10:46015000-46025600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:46015200-46016000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:46015200-46016000	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr10:46015200-46016200	Enhancers	Liver	Liver
33	chr10:46015400-46025800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr10:46015600-46017600	Weak transcription	Ovary	ovary
35	chr10:46015600-46026000	Weak transcription	Aorta	Aorta
36	chr10:46015600-46043400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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