Variant report

Variant	rs34971823
Chromosome Location	chr10:45933842-45933843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr10:45932896-45933971	K562	blood:	n/a	n/a
2	TBL1XR1	chr10:45933693-45933895	K562	blood:	n/a	n/a
3	TEAD4	chr10:45932908-45933996	K562	blood:	n/a	n/a
4	ZNF143	chr10:45933821-45933921	GM12878	blood:	n/a	n/a
5	KAP1	chr10:45933273-45933859	K562	blood:	n/a	n/a
6	SPI1	chr10:45933293-45934011	GM12878	blood:	n/a	n/a
7	CCNT2	chr10:45933516-45933847	K562	blood:	n/a	n/a
8	ZNF384	chr10:45933205-45933939	K562	blood:	n/a	n/a
9	RCOR1	chr10:45933068-45934047	K562	blood:	n/a	n/a
10	RCOR1	chr10:45933643-45934032	K562	blood:	n/a	n/a
11	ZNF143	chr10:45933276-45934485	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45916870..45919327-chr10:45931748..45934680,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM21C-4	chr10:45931684-45934607	NONHSAT013093

No data

Variant related genes	Relation type
ALOX5	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12266963	1.00[EUR][1000 genomes]
rs12762375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12765209	1.00[AFR][1000 genomes]
rs12772724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12773979	1.00[EUR][1000 genomes]
rs12774534	1.00[EUR][1000 genomes]
rs12776062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12781248	1.00[EUR][1000 genomes]
rs12782256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12783037	1.00[EUR][1000 genomes]
rs12784527	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17157883	0.84[EUR][1000 genomes]
rs17451516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17451757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17452587	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17523660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34028441	1.00[AMR][1000 genomes]
rs34063374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34208634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34349618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34371883	1.00[EUR][1000 genomes]
rs34445001	1.00[EUR][1000 genomes]
rs34570485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34640551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34681532	1.00[AMR][1000 genomes]
rs34744856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34763590	1.00[AMR][1000 genomes]
rs34831109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35098689	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35124937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35468901	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35479649	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35489926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35490739	1.00[AMR][1000 genomes]
rs35517795	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35599399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35911307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4073658	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71494783	1.00[EUR][1000 genomes]
rs71494784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71496616	1.00[AMR][1000 genomes]
rs9422649	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv895110	chr10:45912771-45953767	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45916600-45949200	Weak transcription	Gastric	stomach
2	chr10:45925000-45940600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:45925000-45949200	Weak transcription	Lung	lung
4	chr10:45925800-45936200	Weak transcription	Placenta	Placenta
5	chr10:45928800-45951000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:45929000-45934800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:45929200-45951600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:45929600-45934600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:45930200-45934200	Weak transcription	Spleen	Spleen
10	chr10:45930200-45938400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:45930600-45934200	Weak transcription	Thymus	Thymus
12	chr10:45930800-45934000	ZNF genes & repeats	GM12878-XiMat	blood
13	chr10:45930800-45935200	Weak transcription	Fetal Thymus	thymus
14	chr10:45930800-45935400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
15	chr10:45932400-45934000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr10:45932400-45934800	Enhancers	Pancreas	Pancrea
17	chr10:45933000-45934000	Genic enhancers	Primary B cells from cord blood	blood
18	chr10:45933200-45934000	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:45933200-45934200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:45933600-45934000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
21	chr10:45933600-45934800	Enhancers	K562	blood
22	chr10:45933800-45934000	Genic enhancers	Primary B cells from peripheral blood	blood
23	chr10:45933800-45934000	ZNF genes & repeats	Esophagus	oesophagus
24	chr10:45933800-45934200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:45933800-45934200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
26	chr10:45933800-45934400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:45933800-45934400	Enhancers	HMEC	breast
28	chr10:45933800-45935400	Bivalent Enhancer	HepG2	liver

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