Variant report

Variant	rs12773979
Chromosome Location	chr10:45980985-45980986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45976905..45979805-chr10:45980072..45982025,2	MCF-7	breast:
2	chr10:45980306..45983140-chr10:45986596..45988629,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12266963	1.00[EUR][1000 genomes]
rs12762375	1.00[EUR][1000 genomes]
rs12772724	1.00[EUR][1000 genomes]
rs12774534	1.00[EUR][1000 genomes]
rs12776062	1.00[EUR][1000 genomes]
rs12781248	1.00[EUR][1000 genomes]
rs12782256	1.00[EUR][1000 genomes]
rs12783037	1.00[EUR][1000 genomes]
rs12784527	0.84[EUR][1000 genomes]
rs13134	1.00[EUR][1000 genomes]
rs17157883	0.84[EUR][1000 genomes]
rs17451516	1.00[EUR][1000 genomes]
rs17451757	1.00[EUR][1000 genomes]
rs17452587	0.84[EUR][1000 genomes]
rs17523660	1.00[EUR][1000 genomes]
rs34063374	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34208634	1.00[EUR][1000 genomes]
rs34349618	1.00[EUR][1000 genomes]
rs34371883	1.00[EUR][1000 genomes]
rs34445001	1.00[EUR][1000 genomes]
rs34570485	1.00[EUR][1000 genomes]
rs34640551	1.00[EUR][1000 genomes]
rs34744856	1.00[EUR][1000 genomes]
rs34831109	1.00[EUR][1000 genomes]
rs34971823	1.00[EUR][1000 genomes]
rs35098689	0.84[EUR][1000 genomes]
rs35124937	1.00[EUR][1000 genomes]
rs35468901	0.84[EUR][1000 genomes]
rs35479649	0.84[EUR][1000 genomes]
rs35489926	1.00[EUR][1000 genomes]
rs35517795	0.84[EUR][1000 genomes]
rs35599399	1.00[EUR][1000 genomes]
rs35911307	1.00[EUR][1000 genomes]
rs4073658	0.84[EUR][1000 genomes]
rs71494783	1.00[EUR][1000 genomes]
rs71494784	1.00[EUR][1000 genomes]
rs71494801	1.00[EUR][1000 genomes]
rs9422649	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45967600-45983400	Weak transcription	Right Atrium	heart
2	chr10:45967800-45985200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:45968000-45986000	Weak transcription	HepG2	liver
4	chr10:45969400-45983800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:45969600-45983400	Weak transcription	Liver	Liver
6	chr10:45969600-45983400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:45969800-45983400	Weak transcription	Pancreas	Pancrea
8	chr10:45970600-45983400	Weak transcription	Left Ventricle	heart
9	chr10:45970800-45983400	Weak transcription	Gastric	stomach
10	chr10:45971400-45983800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:45972200-45988000	Weak transcription	Spleen	Spleen
12	chr10:45973200-45982800	Weak transcription	Aorta	Aorta
13	chr10:45973400-45983800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:45973600-45982800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:45974800-45983400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:45974800-45990600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:45975000-45983400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:45975000-45983400	Weak transcription	Psoas Muscle	Psoas
19	chr10:45975400-45983600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:45975800-45983400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:45976000-45982800	Weak transcription	K562	blood
22	chr10:45976400-45982800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:45976400-45986000	Weak transcription	HSMMtube	muscle
24	chr10:45977000-45984400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:45977200-45985600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:45977400-45982800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:45977600-45983400	Weak transcription	Right Ventricle	heart
28	chr10:45977800-45983000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:45977800-45984600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr10:45978000-45983400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:45978000-45985400	Strong transcription	Primary hematopoietic stem cells	blood
32	chr10:45978200-45981800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:45978200-45985800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:45978400-45983000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:45978400-45983200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:45978600-45983400	Weak transcription	Brain Angular Gyrus	brain
37	chr10:45978600-45985200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:45978600-45985200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:45978600-46000800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:45978800-45982800	Weak transcription	Brain Anterior Caudate	brain
41	chr10:45979000-45983600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:45979000-45985200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr10:45979000-45985800	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:45979200-45985600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:45979400-45985600	Weak transcription	Fetal Kidney	kidney
46	chr10:45979400-45986000	Weak transcription	Brain Substantia Nigra	brain
47	chr10:45979600-45981400	Strong transcription	Primary T cells from cord blood	blood
48	chr10:45979800-45981600	Strong transcription	Thymus	Thymus
49	chr10:45979800-45981800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:45979800-45982200	Strong transcription	Adipose Nuclei	Adipose

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