Variant report

Variant	rs12783037
Chromosome Location	chr10:45929965-45929966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1051713	0.86[ASN][1000 genomes]
rs12247163	0.89[ASN][1000 genomes]
rs12265175	0.85[AFR][1000 genomes]
rs12266963	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762375	1.00[EUR][1000 genomes]
rs12765320	0.86[CHB][hapmap]
rs12772724	1.00[EUR][1000 genomes]
rs12773979	1.00[EUR][1000 genomes]
rs12774534	1.00[EUR][1000 genomes]
rs12776062	1.00[EUR][1000 genomes]
rs12781248	1.00[EUR][1000 genomes]
rs12782256	1.00[EUR][1000 genomes]
rs12784527	0.84[EUR][1000 genomes]
rs13134	1.00[EUR][1000 genomes]
rs17157784	0.85[CHB][hapmap]
rs17157883	0.84[EUR][1000 genomes]
rs17451516	1.00[EUR][1000 genomes]
rs17451757	1.00[EUR][1000 genomes]
rs17452587	0.84[EUR][1000 genomes]
rs17523660	1.00[EUR][1000 genomes]
rs2306814	0.85[CHB][hapmap]
rs34063374	1.00[EUR][1000 genomes]
rs34208634	1.00[EUR][1000 genomes]
rs34349618	1.00[EUR][1000 genomes]
rs34371883	1.00[EUR][1000 genomes]
rs34445001	1.00[EUR][1000 genomes]
rs34570485	1.00[EUR][1000 genomes]
rs34640551	1.00[EUR][1000 genomes]
rs34744856	1.00[EUR][1000 genomes]
rs34831109	1.00[EUR][1000 genomes]
rs34971823	1.00[EUR][1000 genomes]
rs35098689	0.84[EUR][1000 genomes]
rs35124937	1.00[EUR][1000 genomes]
rs35468901	0.84[EUR][1000 genomes]
rs35479649	0.84[EUR][1000 genomes]
rs35489926	1.00[EUR][1000 genomes]
rs35517795	0.84[EUR][1000 genomes]
rs35599399	1.00[EUR][1000 genomes]
rs35911307	1.00[EUR][1000 genomes]
rs3802547	0.85[CHB][hapmap]
rs4073658	0.84[EUR][1000 genomes]
rs7068039	0.89[ASN][1000 genomes]
rs71494783	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494784	1.00[EUR][1000 genomes]
rs71494801	1.00[EUR][1000 genomes]
rs9422649	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv895110	chr10:45912771-45953767	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45916600-45949200	Weak transcription	Gastric	stomach
2	chr10:45921400-45930800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:45921400-45931600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:45921600-45930400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr10:45921800-45933800	Weak transcription	Esophagus	oesophagus
6	chr10:45925000-45940600	Weak transcription	Fetal Intestine Small	intestine
7	chr10:45925000-45949200	Weak transcription	Lung	lung
8	chr10:45925800-45936200	Weak transcription	Placenta	Placenta
9	chr10:45927800-45930800	Strong transcription	Primary B cells from cord blood	blood
10	chr10:45928200-45930400	Enhancers	K562	blood
11	chr10:45928400-45930000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:45928400-45930000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:45928400-45930200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:45928400-45930200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:45928400-45930200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:45928600-45930000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:45928600-45930000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr10:45928600-45930200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:45928600-45930200	Enhancers	Pancreas	Pancrea
20	chr10:45928600-45930400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr10:45928600-45930600	Enhancers	Primary T cells fromperipheralblood	blood
22	chr10:45928600-45930600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr10:45928600-45930800	Enhancers	Fetal Thymus	thymus
24	chr10:45928800-45930200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr10:45928800-45930600	Enhancers	Thymus	Thymus
26	chr10:45928800-45951000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:45929000-45930200	Enhancers	Primary T cells from cord blood	blood
28	chr10:45929000-45931000	Weak transcription	Small Intestine	intestine
29	chr10:45929000-45934800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:45929200-45930000	Genic enhancers	Primary B cells from peripheral blood	blood
31	chr10:45929200-45930200	Flanking Active TSS	GM12878-XiMat	blood
32	chr10:45929200-45951600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:45929600-45930200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:45929600-45930200	Strong transcription	Spleen	Spleen
35	chr10:45929600-45934600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:45929800-45930000	Enhancers	HUES48 Cell Line	embryonic stem cell

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