Variant report

Variant	rs34744856
Chromosome Location	chr10:45971392-45971393
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45965669..45968296-chr10:45969406..45974419,5	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12266963	1.00[EUR][1000 genomes]
rs12762375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12772724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12773979	1.00[EUR][1000 genomes]
rs12774534	1.00[EUR][1000 genomes]
rs12776062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12781248	1.00[EUR][1000 genomes]
rs12782256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12783037	1.00[EUR][1000 genomes]
rs12784527	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17157883	0.84[EUR][1000 genomes]
rs17451516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17451757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17452587	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17523660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34028441	1.00[AMR][1000 genomes]
rs34063374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34208634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34349618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34371883	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34445001	1.00[EUR][1000 genomes]
rs34570485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34640551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34681532	1.00[AMR][1000 genomes]
rs34763590	1.00[AMR][1000 genomes]
rs34831109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34971823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35098689	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35124937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35468901	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35479649	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35489926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35490739	1.00[AMR][1000 genomes]
rs35517795	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35599399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35911307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4073658	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71494783	1.00[EUR][1000 genomes]
rs71494784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71496616	1.00[AMR][1000 genomes]
rs9422649	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45966200-45971600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr10:45966400-45979800	Weak transcription	Thymus	Thymus
3	chr10:45967000-45971600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:45967400-45971600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:45967600-45971800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:45967600-45972400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:45967600-45974800	Weak transcription	Psoas Muscle	Psoas
8	chr10:45967600-45979200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:45967600-45979600	Weak transcription	Ovary	ovary
10	chr10:45967600-45983400	Weak transcription	Right Atrium	heart
11	chr10:45967800-45980200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:45967800-45985200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:45968000-45986000	Weak transcription	HepG2	liver
14	chr10:45968600-45971600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:45969400-45971400	Weak transcription	K562	blood
16	chr10:45969400-45983800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:45969600-45983400	Weak transcription	Liver	Liver
18	chr10:45969600-45983400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:45969800-45971600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
20	chr10:45969800-45983400	Weak transcription	Pancreas	Pancrea
21	chr10:45970200-45971400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr10:45970200-45971400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:45970600-45983400	Weak transcription	Left Ventricle	heart
24	chr10:45970800-45972000	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr10:45970800-45983400	Weak transcription	Gastric	stomach
26	chr10:45971200-45971600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:45971200-45971800	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr10:45971200-45971800	ZNF genes & repeats	Fetal Brain Male	brain
29	chr10:45971200-45973800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:45971200-45979800	Weak transcription	Lung	lung

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