Variant report

Variant	rs35599399
Chromosome Location	chr10:45998182-45998183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12266963	1.00[EUR][1000 genomes]
rs12762375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12772724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12773979	1.00[EUR][1000 genomes]
rs12774534	1.00[EUR][1000 genomes]
rs12776062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12781248	1.00[EUR][1000 genomes]
rs12782256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12783037	1.00[EUR][1000 genomes]
rs12784527	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17157883	0.84[EUR][1000 genomes]
rs17451516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17451757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17452587	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17523660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34028441	1.00[AMR][1000 genomes]
rs34063374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34208634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34349618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34371883	1.00[EUR][1000 genomes]
rs34445001	1.00[EUR][1000 genomes]
rs34570485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34640551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34681532	1.00[AMR][1000 genomes]
rs34744856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34763590	1.00[AMR][1000 genomes]
rs34831109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34971823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35098689	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35124937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35468901	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35479649	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35489926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35490739	1.00[AMR][1000 genomes]
rs35517795	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35911307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4073658	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71494783	1.00[EUR][1000 genomes]
rs71494784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71496616	1.00[AMR][1000 genomes]
rs9422649	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv895111	chr10:45989745-46071900	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45978600-46000800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:45984200-46011000	Weak transcription	Left Ventricle	heart
3	chr10:45989200-46015200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:45995800-45998600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:45997200-45998800	Enhancers	HepG2	liver
6	chr10:45997800-45998200	Enhancers	A549	lung
7	chr10:45997800-45998800	Enhancers	Liver	Liver

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