Variant report

Variant	rs34029621
Chromosome Location	chr6:149732540-149732541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs35852678	1.00[AFR][1000 genomes]
rs59632689	1.00[AFR][1000 genomes]
rs61090105	1.00[AFR][1000 genomes]
rs73611041	1.00[AFR][1000 genomes]
rs73611045	1.00[AFR][1000 genomes]
rs73613022	1.00[AFR][1000 genomes]
rs73613025	1.00[AFR][1000 genomes]
rs73613039	1.00[AFR][1000 genomes]
rs73613054	1.00[AFR][1000 genomes]
rs73613059	1.00[AFR][1000 genomes]
rs73613069	1.00[AFR][1000 genomes]
rs73613071	1.00[AFR][1000 genomes]
rs73613086	1.00[AFR][1000 genomes]
rs73614909	1.00[AFR][1000 genomes]
rs73615957	1.00[AFR][1000 genomes]
rs73617919	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149700800-149732800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:149701400-149734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:149701600-149733600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:149705200-149734600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:149709400-149733000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:149713800-149735400	Weak transcription	Small Intestine	intestine
8	chr6:149715400-149732600	Strong transcription	Dnd41	blood
9	chr6:149715600-149733600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:149717400-149733200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:149718800-149732800	Strong transcription	HSMM	muscle
12	chr6:149721800-149732800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:149721800-149734000	Weak transcription	Right Ventricle	heart
14	chr6:149721800-149743800	Weak transcription	Lung	lung
15	chr6:149721800-149744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:149721800-149745200	Weak transcription	Pancreas	Pancrea
17	chr6:149722000-149745000	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:149725200-149733200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:149725200-149744600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:149725600-149734400	Weak transcription	HepG2	liver
21	chr6:149726600-149733400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:149727600-149733400	Strong transcription	Primary hematopoietic stem cells	blood
23	chr6:149728200-149734000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr6:149728200-149744600	Weak transcription	Fetal Intestine Small	intestine
25	chr6:149728800-149733400	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:149729200-149732600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:149729400-149733400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:149729400-149733600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr6:149729400-149734000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:149729800-149732600	Strong transcription	NH-A	brain
31	chr6:149729800-149735000	Enhancers	Fetal Heart	heart
32	chr6:149730000-149732800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:149730000-149732800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:149730000-149733200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:149730200-149732600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:149730200-149732600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:149730200-149732600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:149730200-149733000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:149730200-149733000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:149730200-149733200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:149730200-149733400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:149730200-149733800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:149730200-149735600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:149730400-149732600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:149730400-149732600	Strong transcription	Adipose Nuclei	Adipose
46	chr6:149730400-149732600	Strong transcription	Duodenum Mucosa	Duodenum
47	chr6:149730400-149732800	Strong transcription	Fetal Intestine Large	intestine
48	chr6:149730400-149733200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:149730400-149733200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:149730400-149733400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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