Variant report

Variant	rs73613071
Chromosome Location	chr6:149675863-149675864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149674096..149676854-chr6:149692307..149694360,2	K562	blood:
2	chr6:149669144..149671922-chr6:149672663..149676405,4	K562	blood:
3	chr6:149636778..149639482-chr6:149674367..149678073,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs34029621	1.00[AFR][1000 genomes]
rs35852678	1.00[AFR][1000 genomes]
rs59632689	1.00[AFR][1000 genomes]
rs61090105	1.00[AFR][1000 genomes]
rs73611041	1.00[AFR][1000 genomes]
rs73611045	1.00[AFR][1000 genomes]
rs73613022	1.00[AFR][1000 genomes]
rs73613025	1.00[AFR][1000 genomes]
rs73613039	1.00[AFR][1000 genomes]
rs73613054	1.00[AFR][1000 genomes]
rs73613059	1.00[AFR][1000 genomes]
rs73613069	1.00[AFR][1000 genomes]
rs73613086	1.00[AFR][1000 genomes]
rs73614909	1.00[AFR][1000 genomes]
rs73615957	1.00[AFR][1000 genomes]
rs73617919	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149641200-149681400	Weak transcription	Fetal Stomach	stomach
2	chr6:149649400-149689400	Weak transcription	Fetal Brain Female	brain
3	chr6:149656800-149681400	Weak transcription	Psoas Muscle	Psoas
4	chr6:149656800-149682400	Weak transcription	Lung	lung
5	chr6:149656800-149694400	Weak transcription	Placenta	Placenta
6	chr6:149657800-149683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:149657800-149691200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:149658000-149679000	Weak transcription	K562	blood
9	chr6:149658000-149680800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:149658000-149681400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:149658000-149695400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:149658200-149691000	Weak transcription	NHDF-Ad	bronchial
13	chr6:149658800-149692400	Weak transcription	Fetal Kidney	kidney
14	chr6:149659200-149685200	Weak transcription	Ovary	ovary
15	chr6:149659200-149691400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:149659400-149679000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:149659600-149679200	Weak transcription	NH-A	brain
18	chr6:149659600-149684200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:149660400-149682200	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:149660400-149682400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:149660400-149685600	Weak transcription	Pancreas	Pancrea
22	chr6:149660400-149699200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:149662200-149694800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:149663400-149685400	Weak transcription	Fetal Lung	lung
25	chr6:149663800-149685400	Weak transcription	Brain Anterior Caudate	brain
26	chr6:149664000-149682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:149664000-149687400	Weak transcription	HSMM	muscle
28	chr6:149664000-149694400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:149664600-149681400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:149664600-149687400	Weak transcription	Right Ventricle	heart
31	chr6:149665600-149680400	Weak transcription	Brain Germinal Matrix	brain
32	chr6:149665800-149680400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:149666000-149680400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:149666200-149685400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:149666400-149683400	Weak transcription	NHEK	skin
36	chr6:149667400-149684200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:149667400-149685600	Weak transcription	Stomach Mucosa	stomach
38	chr6:149667600-149678600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:149667600-149679000	Weak transcription	A549	lung
40	chr6:149667600-149691000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:149668400-149682400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:149668600-149677600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:149668600-149679400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:149668600-149680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:149668600-149681400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:149668600-149683400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:149669000-149685400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:149669400-149690400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:149670200-149677400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:149670400-149676000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links