Variant report

Variant	rs73613025
Chromosome Location	chr6:149655436-149655437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149654386..149656937-chr6:149663609..149665737,2	K562	blood:
2	chr6:149654628..149657508-chr6:149659280..149661788,2	MCF-7	breast:
3	chr6:149646598..149650161-chr6:149650268..149655691,6	MCF-7	breast:
4	chr6:149637223..149641886-chr6:149650956..149658366,12	K562	blood:

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs34029621	1.00[AFR][1000 genomes]
rs35852678	1.00[AFR][1000 genomes]
rs59632689	1.00[AFR][1000 genomes]
rs61090105	1.00[AFR][1000 genomes]
rs73611041	1.00[AFR][1000 genomes]
rs73611045	1.00[AFR][1000 genomes]
rs73613022	1.00[AFR][1000 genomes]
rs73613039	1.00[AFR][1000 genomes]
rs73613054	1.00[AFR][1000 genomes]
rs73613059	1.00[AFR][1000 genomes]
rs73613069	1.00[AFR][1000 genomes]
rs73613071	1.00[AFR][1000 genomes]
rs73613086	1.00[AFR][1000 genomes]
rs73614909	1.00[AFR][1000 genomes]
rs73615957	1.00[AFR][1000 genomes]
rs73617919	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv517889	chr6:149653792-149658118	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149640200-149655600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:149641200-149657400	Weak transcription	Aorta	Aorta
3	chr6:149641200-149681400	Weak transcription	Fetal Stomach	stomach
4	chr6:149641400-149655600	Weak transcription	Placenta	Placenta
5	chr6:149641600-149656000	Weak transcription	Lung	lung
6	chr6:149641600-149660200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:149641800-149660200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:149642600-149657200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:149645000-149666400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:149646200-149657400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:149648400-149660600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:149648600-149656600	Enhancers	Fetal Heart	heart
13	chr6:149648600-149659200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:149648600-149659600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr6:149648800-149656000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:149649000-149657200	Weak transcription	Fetal Intestine Large	intestine
17	chr6:149649000-149660200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:149649200-149657200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:149649400-149659000	Enhancers	Primary T cells from cord blood	blood
20	chr6:149649400-149689400	Weak transcription	Fetal Brain Female	brain
21	chr6:149649800-149655600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:149649800-149660200	Weak transcription	Gastric	stomach
23	chr6:149650600-149656000	Weak transcription	Colonic Mucosa	Colon
24	chr6:149650800-149655600	Weak transcription	Fetal Thymus	thymus
25	chr6:149650800-149655600	Weak transcription	Thymus	Thymus
26	chr6:149650800-149657400	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:149651400-149660000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:149651400-149660000	Enhancers	Liver	Liver
29	chr6:149651600-149656000	Enhancers	Brain Hippocampus Middle	brain
30	chr6:149651600-149657200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:149651600-149659200	Enhancers	Dnd41	blood
32	chr6:149651800-149658400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:149652000-149655800	Enhancers	NHEK	skin
34	chr6:149652000-149659000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:149652000-149659400	Enhancers	Brain Anterior Caudate	brain
36	chr6:149652200-149657200	Enhancers	Colon Smooth Muscle	Colon
37	chr6:149652200-149658800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:149652400-149659600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:149652600-149655800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:149652600-149656000	Enhancers	Brain Substantia Nigra	brain
41	chr6:149652600-149657400	Enhancers	HMEC	breast
42	chr6:149652600-149658000	Enhancers	Adipose Nuclei	Adipose
43	chr6:149652600-149658200	Enhancers	NHDF-Ad	bronchial
44	chr6:149652600-149659000	Enhancers	Osteobl	bone
45	chr6:149652600-149659400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:149652600-149659400	Enhancers	Rectal Smooth Muscle	rectum
47	chr6:149652600-149659600	Enhancers	NH-A	brain
48	chr6:149652600-149659800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:149652800-149655800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr6:149652800-149656400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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