Variant report

Variant	rs61090105
Chromosome Location	chr6:149707914-149707915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149706464..149708710-chr6:149709911..149712355,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs34029621	1.00[AFR][1000 genomes]
rs35852678	1.00[AFR][1000 genomes]
rs59632689	1.00[AFR][1000 genomes]
rs73611041	1.00[AFR][1000 genomes]
rs73611045	1.00[AFR][1000 genomes]
rs73613022	1.00[AFR][1000 genomes]
rs73613025	1.00[AFR][1000 genomes]
rs73613039	1.00[AFR][1000 genomes]
rs73613054	1.00[AFR][1000 genomes]
rs73613059	1.00[AFR][1000 genomes]
rs73613069	1.00[AFR][1000 genomes]
rs73613071	1.00[AFR][1000 genomes]
rs73613086	1.00[AFR][1000 genomes]
rs73614909	1.00[AFR][1000 genomes]
rs73615957	1.00[AFR][1000 genomes]
rs73617919	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149682600-149709200	Weak transcription	Psoas Muscle	Psoas
2	chr6:149686000-149709000	Weak transcription	Stomach Mucosa	stomach
3	chr6:149687800-149726400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:149695400-149709600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:149697400-149708200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:149697600-149709000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:149697600-149713600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:149698400-149709600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:149700400-149709000	Weak transcription	Fetal Heart	heart
10	chr6:149700400-149728400	Weak transcription	Hela-S3	cervix
11	chr6:149700400-149732400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:149700600-149708000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:149700600-149709200	Weak transcription	Pancreas	Pancrea
14	chr6:149700600-149721200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:149700600-149721200	Weak transcription	Colonic Mucosa	Colon
16	chr6:149700600-149721200	Weak transcription	Right Ventricle	heart
17	chr6:149700600-149730800	Weak transcription	Fetal Brain Male	brain
18	chr6:149700800-149721000	Weak transcription	K562	blood
19	chr6:149700800-149721200	Weak transcription	Aorta	Aorta
20	chr6:149700800-149732800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:149701000-149710800	Weak transcription	NHDF-Ad	bronchial
22	chr6:149701200-149710200	Weak transcription	Esophagus	oesophagus
23	chr6:149701200-149721200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:149701400-149709000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:149701400-149710800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:149701400-149717400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:149701400-149717800	Weak transcription	Fetal Kidney	kidney
28	chr6:149701400-149721200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:149701400-149730800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:149701400-149734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:149701600-149712600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:149701600-149733600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:149702200-149709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:149702400-149718800	Weak transcription	HUVEC	blood vessel
35	chr6:149702400-149721200	Weak transcription	Fetal Brain Female	brain
36	chr6:149703000-149716000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:149703200-149708000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:149703200-149709200	Weak transcription	Gastric	stomach
39	chr6:149703200-149709200	Weak transcription	Ovary	ovary
40	chr6:149703200-149709400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:149703200-149717200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:149703200-149718400	Weak transcription	Thymus	Thymus
43	chr6:149703200-149719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:149703200-149720400	Weak transcription	Brain Angular Gyrus	brain
45	chr6:149703200-149721200	Weak transcription	Spleen	Spleen
46	chr6:149703400-149708800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:149703400-149709000	Weak transcription	Brain Substantia Nigra	brain
48	chr6:149703400-149709200	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:149703400-149709400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:149703400-149709600	Strong transcription	Fetal Thymus	thymus

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