Variant report

Variant	rs73613039
Chromosome Location	chr6:149662490-149662491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs34029621	1.00[AFR][1000 genomes]
rs35852678	1.00[AFR][1000 genomes]
rs59632689	1.00[AFR][1000 genomes]
rs61090105	1.00[AFR][1000 genomes]
rs73611041	1.00[AFR][1000 genomes]
rs73611045	1.00[AFR][1000 genomes]
rs73613022	1.00[AFR][1000 genomes]
rs73613025	1.00[AFR][1000 genomes]
rs73613054	1.00[AFR][1000 genomes]
rs73613059	1.00[AFR][1000 genomes]
rs73613069	1.00[AFR][1000 genomes]
rs73613071	1.00[AFR][1000 genomes]
rs73613086	1.00[AFR][1000 genomes]
rs73614909	1.00[AFR][1000 genomes]
rs73615957	1.00[AFR][1000 genomes]
rs73617919	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149641200-149681400	Weak transcription	Fetal Stomach	stomach
2	chr6:149645000-149666400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:149649400-149689400	Weak transcription	Fetal Brain Female	brain
4	chr6:149654000-149674200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:149654600-149668600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:149656200-149670800	Weak transcription	Esophagus	oesophagus
7	chr6:149656800-149681400	Weak transcription	Psoas Muscle	Psoas
8	chr6:149656800-149682400	Weak transcription	Lung	lung
9	chr6:149656800-149694400	Weak transcription	Placenta	Placenta
10	chr6:149657400-149663600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:149657400-149665800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:149657600-149663200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:149657800-149673800	Weak transcription	Thymus	Thymus
14	chr6:149657800-149683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:149657800-149691200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:149658000-149662800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:149658000-149663200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:149658000-149663200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:149658000-149663400	Weak transcription	Small Intestine	intestine
20	chr6:149658000-149663800	Weak transcription	Aorta	Aorta
21	chr6:149658000-149663800	Weak transcription	Right Ventricle	heart
22	chr6:149658000-149673800	Weak transcription	Fetal Intestine Large	intestine
23	chr6:149658000-149673800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:149658000-149674000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:149658000-149679000	Weak transcription	K562	blood
26	chr6:149658000-149680800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:149658000-149681400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:149658000-149695400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:149658200-149664800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:149658200-149691000	Weak transcription	NHDF-Ad	bronchial
31	chr6:149658600-149664400	Weak transcription	Right Atrium	heart
32	chr6:149658800-149663600	Weak transcription	NHEK	skin
33	chr6:149658800-149666400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:149658800-149674000	Weak transcription	HepG2	liver
35	chr6:149658800-149692400	Weak transcription	Fetal Kidney	kidney
36	chr6:149659000-149662600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:149659000-149664800	Weak transcription	HUVEC	blood vessel
38	chr6:149659200-149663400	Weak transcription	Dnd41	blood
39	chr6:149659200-149663600	Weak transcription	HMEC	breast
40	chr6:149659200-149685200	Weak transcription	Ovary	ovary
41	chr6:149659200-149691400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:149659400-149662600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr6:149659400-149662600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr6:149659400-149662600	Weak transcription	Brain Anterior Caudate	brain
45	chr6:149659400-149662600	Weak transcription	Fetal Lung	lung
46	chr6:149659400-149662800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:149659400-149662800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr6:149659400-149663800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:149659400-149679000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:149659600-149663400	Enhancers	Primary T helper cells PMA-I stimulated	--

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