Variant report

Variant	rs73617919
Chromosome Location	chr6:149768786-149768787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149767445..149770252-chr6:149772541..149774258,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs34029621	0.87[AFR][1000 genomes]
rs35852678	0.87[AFR][1000 genomes]
rs59632689	0.87[AFR][1000 genomes]
rs61090105	0.87[AFR][1000 genomes]
rs73611041	0.87[AFR][1000 genomes]
rs73611045	0.87[AFR][1000 genomes]
rs73613022	0.87[AFR][1000 genomes]
rs73613025	0.87[AFR][1000 genomes]
rs73613039	0.87[AFR][1000 genomes]
rs73613054	0.87[AFR][1000 genomes]
rs73613059	0.87[AFR][1000 genomes]
rs73613069	0.87[AFR][1000 genomes]
rs73613071	0.87[AFR][1000 genomes]
rs73613086	0.87[AFR][1000 genomes]
rs73614909	0.87[AFR][1000 genomes]
rs73615957	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149753400-149770000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:149753600-149769600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:149761600-149769600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:149762600-149770800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:149762800-149771000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:149763200-149770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:149763200-149771000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:149763200-149771400	Weak transcription	Pancreas	Pancrea
9	chr6:149764800-149771400	Weak transcription	Spleen	Spleen
10	chr6:149765200-149771400	Weak transcription	Brain Anterior Caudate	brain
11	chr6:149766000-149769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:149766000-149771400	Weak transcription	Right Atrium	heart
13	chr6:149766200-149771000	Weak transcription	GM12878-XiMat	blood
14	chr6:149766200-149771200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:149766600-149769800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:149766600-149773000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:149766800-149771000	Weak transcription	Fetal Heart	heart
18	chr6:149766800-149771400	Weak transcription	Left Ventricle	heart
19	chr6:149766800-149771600	Weak transcription	Lung	lung
20	chr6:149767400-149772800	Weak transcription	HepG2	liver
21	chr6:149767600-149769600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:149768400-149771600	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:149768400-149779400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:149768600-149769000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:149768600-149771600	Weak transcription	Gastric	stomach

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