Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10857123	0.85[ASN][1000 genomes]
rs11726994	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12643562	0.81[EUR][1000 genomes]
rs13102188	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13107241	0.84[ASN][1000 genomes]
rs13118101	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13123189	0.85[ASN][1000 genomes]
rs13127462	0.85[ASN][1000 genomes]
rs13130460	0.83[ASN][1000 genomes]
rs13131457	0.81[ASN][1000 genomes]
rs13135599	0.84[ASN][1000 genomes]
rs13135955	0.84[ASN][1000 genomes]
rs17012108	0.85[ASN][1000 genomes]
rs35899860	0.83[ASN][1000 genomes]
rs4833369	0.85[ASN][1000 genomes]
rs4834179	0.85[ASN][1000 genomes]
rs4834180	0.85[ASN][1000 genomes]
rs67169994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6823821	0.81[ASN][1000 genomes]
rs7658955	0.83[ASN][1000 genomes]
rs7659106	0.84[ASN][1000 genomes]
rs7682967	0.86[ASN][1000 genomes]
rs7683191	0.85[ASN][1000 genomes]
rs7683469	0.85[ASN][1000 genomes]
rs899933	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353295	chr4:127994396-128017617	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128007600-128008000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:128007600-128008200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

Quick Search: