Variant report
| Variant | rs67169994 |
|---|---|
| Chromosome Location | chr4:128007649-128007650 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10857123 | 0.87[ASN][1000 genomes] |
| rs11726994 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11727022 | 0.80[ASN][1000 genomes] |
| rs11929956 | 0.80[ASN][1000 genomes] |
| rs12639817 | 0.80[ASN][1000 genomes] |
| rs12643562 | 0.81[EUR][1000 genomes] |
| rs13102188 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13107241 | 0.87[ASN][1000 genomes] |
| rs13111116 | 0.81[ASN][1000 genomes] |
| rs13111239 | 0.80[ASN][1000 genomes] |
| rs13111610 | 0.81[ASN][1000 genomes] |
| rs13117384 | 0.81[ASN][1000 genomes] |
| rs13118101 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13123189 | 0.87[ASN][1000 genomes] |
| rs13127462 | 0.87[ASN][1000 genomes] |
| rs13130460 | 0.85[ASN][1000 genomes] |
| rs13131457 | 0.83[ASN][1000 genomes] |
| rs13135599 | 0.87[ASN][1000 genomes] |
| rs13135955 | 0.87[ASN][1000 genomes] |
| rs1480905 | 0.81[ASN][1000 genomes] |
| rs1480906 | 0.81[ASN][1000 genomes] |
| rs17012108 | 0.87[ASN][1000 genomes] |
| rs34042860 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35899860 | 0.85[ASN][1000 genomes] |
| rs4560424 | 0.82[ASN][1000 genomes] |
| rs4833369 | 0.87[ASN][1000 genomes] |
| rs4834179 | 0.87[ASN][1000 genomes] |
| rs4834180 | 0.87[ASN][1000 genomes] |
| rs6823821 | 0.83[ASN][1000 genomes] |
| rs7658955 | 0.86[ASN][1000 genomes] |
| rs7659106 | 0.87[ASN][1000 genomes] |
| rs7676467 | 0.80[ASN][1000 genomes] |
| rs7682967 | 0.89[ASN][1000 genomes] |
| rs7683191 | 0.87[ASN][1000 genomes] |
| rs7683469 | 0.87[ASN][1000 genomes] |
| rs899933 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3353295 | chr4:127994396-128017617 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv879914 | chr4:128005362-128123638 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:128007400-128007800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr4:128007600-128008000 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 3 | chr4:128007600-128008200 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
