Variant report

Variant	rs7676467
Chromosome Location	chr4:128103815-128103816
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10857123	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11726994	0.88[ASN][1000 genomes]
rs11727022	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929956	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501512	0.81[AFR][1000 genomes]
rs12639817	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13102188	0.80[ASN][1000 genomes]
rs13107241	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13111116	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13111239	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111610	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13117384	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13118101	0.80[ASN][1000 genomes]
rs13122080	0.81[ASN][1000 genomes]
rs13123189	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13127462	0.90[ASN][1000 genomes]
rs13130460	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13131457	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13135599	0.89[ASN][1000 genomes]
rs13135955	0.89[ASN][1000 genomes]
rs13148721	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480905	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1480906	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17012108	0.90[ASN][1000 genomes]
rs35899860	0.92[ASN][1000 genomes]
rs4560424	0.83[ASN][1000 genomes]
rs4833369	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4834179	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4834180	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4834181	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67169994	0.80[ASN][1000 genomes]
rs6817083	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6823821	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7658955	0.90[ASN][1000 genomes]
rs7659106	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7682967	0.88[ASN][1000 genomes]
rs7683191	0.90[ASN][1000 genomes]
rs7683469	0.90[ASN][1000 genomes]
rs899933	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128102200-128104400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:128102800-128104400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:128102800-128104400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:128103600-128104000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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