Variant report

Variant	rs17012108
Chromosome Location	chr4:128044325-128044326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10857123	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727022	0.90[ASN][1000 genomes]
rs11929956	0.90[ASN][1000 genomes]
rs12639817	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13102188	0.87[ASN][1000 genomes]
rs13107241	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13111116	0.93[ASN][1000 genomes]
rs13111239	0.90[ASN][1000 genomes]
rs13111610	0.93[ASN][1000 genomes]
rs13117384	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13118101	0.87[ASN][1000 genomes]
rs13122080	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13123189	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130460	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13131457	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13135599	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13135955	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13141779	0.98[EUR][1000 genomes]
rs13148721	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13150739	0.95[EUR][1000 genomes]
rs1480905	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1480906	0.93[ASN][1000 genomes]
rs34042860	0.85[ASN][1000 genomes]
rs35899860	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4833369	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834179	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834180	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834181	0.86[ASN][1000 genomes]
rs67169994	0.87[ASN][1000 genomes]
rs6817083	0.92[ASN][1000 genomes]
rs6823821	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7658955	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7659106	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7676467	0.90[ASN][1000 genomes]
rs7682967	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7683191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7683469	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899933	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128040600-128044400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:128040600-128046400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:128042000-128044400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:128042000-128046000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:128042000-128046200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:128042000-128047600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:128042200-128046400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:128042400-128045400	Weak transcription	Fetal Brain Male	brain

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