Variant report

Variant	rs6817083
Chromosome Location	chr4:128083326-128083327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10857123	0.92[ASN][1000 genomes]
rs11726994	0.86[ASN][1000 genomes]
rs11727022	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11929956	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12639817	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13107241	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13111116	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13111239	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13111610	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13117384	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13122080	0.83[ASN][1000 genomes]
rs13123189	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13127462	0.92[ASN][1000 genomes]
rs13130460	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13131457	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13135599	0.91[ASN][1000 genomes]
rs13135955	0.91[ASN][1000 genomes]
rs13148721	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1480905	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1480906	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17012108	0.92[ASN][1000 genomes]
rs35899860	0.94[ASN][1000 genomes]
rs4560424	0.81[ASN][1000 genomes]
rs4833369	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4834179	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4834180	0.92[ASN][1000 genomes]
rs4834181	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6823821	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7658955	0.92[ASN][1000 genomes]
rs7659106	0.92[ASN][1000 genomes]
rs7676467	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7682967	0.90[ASN][1000 genomes]
rs7683191	0.92[ASN][1000 genomes]
rs7683469	0.92[ASN][1000 genomes]
rs899933	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128082600-128083600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:128083200-128083400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:128083200-128084400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:128083200-128085200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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