Variant report

Variant	rs7659106
Chromosome Location	chr4:128049576-128049577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127876797..127878682-chr4:128046816..128049745,2	K562	blood:
2	chr4:128049381..128052250-chr4:128052874..128054495,2	K562	blood:
3	chr4:128049162..128050116-chr4:128321706..128322303,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10857123	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11727022	0.90[ASN][1000 genomes]
rs11929956	0.90[ASN][1000 genomes]
rs12639817	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13102188	0.87[ASN][1000 genomes]
rs13107241	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111116	0.94[ASN][1000 genomes]
rs13111239	0.90[ASN][1000 genomes]
rs13111610	0.94[ASN][1000 genomes]
rs13117384	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13118101	0.87[ASN][1000 genomes]
rs13122080	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13123189	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13127462	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13130460	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13131457	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13135599	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13135955	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13141779	0.92[EUR][1000 genomes]
rs13148721	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs13150739	0.91[EUR][1000 genomes]
rs1480905	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1480906	0.94[ASN][1000 genomes]
rs17012108	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34042860	0.84[ASN][1000 genomes]
rs35899860	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4833369	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4834179	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4834180	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4834181	0.86[ASN][1000 genomes]
rs67169994	0.87[ASN][1000 genomes]
rs6817083	0.92[ASN][1000 genomes]
rs6823821	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7658955	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7676467	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7682967	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7683191	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7683469	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs899933	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128047400-128054400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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