Variant report

Variant	rs34212996
Chromosome Location	chr17:46344030-46344031
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46342466..46344895-chr17:46702495..46704944,2	MCF-7	breast:
2	chr17:46331179..46335442-chr17:46341781..46344659,3	K562	blood:
3	chr17:46338702..46340433-chr17:46342377..46345030,3	K562	blood:
4	chr17:46320871..46323469-chr17:46343037..46345002,2	K562	blood:
5	chr17:46292783..46295645-chr17:46342921..46345128,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX11-12	chr17:46343973-46344165	l_1466_chr17:46343126-46344165_liver

No data

Variant related genes	Relation type
ENSG00000170689	Chromatin interaction

rs_ID	r²[population]
rs1022087	1.00[AMR][1000 genomes]
rs12946679	0.83[AFR][1000 genomes]
rs34171724	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35323848	1.00[AMR][1000 genomes]
rs35441072	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35513747	0.83[AFR][1000 genomes]
rs35532660	0.83[AFR][1000 genomes]
rs35588100	1.00[AMR][1000 genomes]
rs36052366	0.83[AFR][1000 genomes]
rs60597994	1.00[AMR][1000 genomes]
rs71377353	0.83[AFR][1000 genomes]
rs71377360	1.00[AMR][1000 genomes]
rs8080031	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:46339800-46352200	Weak transcription	Primary T cells from cord blood	blood
8	chr17:46341800-46344400	Enhancers	Fetal Intestine Small	intestine
9	chr17:46341800-46344600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr17:46342200-46344800	Enhancers	Fetal Intestine Large	intestine
11	chr17:46342400-46347800	Weak transcription	Psoas Muscle	Psoas
12	chr17:46343400-46344200	Active TSS	A549	lung
13	chr17:46343400-46344400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:46343400-46354000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:46343400-46355800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr17:46343600-46344200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr17:46343600-46356000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr17:46343800-46344200	Enhancers	K562	blood
20	chr17:46343800-46345000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr17:46343800-46348000	Weak transcription	Fetal Heart	heart
22	chr17:46343800-46352400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr17:46343800-46353800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr17:46344000-46344200	Enhancers	Primary T cells fromperipheralblood	blood

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