Variant report

Variant	rs71377360
Chromosome Location	chr17:46460868-46460869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46459433..46462163-chr17:46658202..46660838,2	K562	blood:

Variant related genes	Relation type
ENSG00000120093	Chromatin interaction
ENSG00000257178	Chromatin interaction

rs_ID	r²[population]
rs1022087	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941129	0.84[AFR][1000 genomes]
rs12941742	0.81[AFR][1000 genomes]
rs12947993	0.84[AFR][1000 genomes]
rs12948331	0.80[AFR][1000 genomes]
rs12950437	0.80[AFR][1000 genomes]
rs34018531	0.80[AFR][1000 genomes]
rs34171724	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34206844	0.80[AFR][1000 genomes]
rs34212996	1.00[AMR][1000 genomes]
rs34287661	0.80[AFR][1000 genomes]
rs34367404	0.86[AFR][1000 genomes]
rs34507526	0.81[AFR][1000 genomes]
rs34583963	0.80[AFR][1000 genomes]
rs34641642	0.84[AFR][1000 genomes]
rs34736152	0.80[AFR][1000 genomes]
rs34938374	0.84[AFR][1000 genomes]
rs34981051	0.84[AFR][1000 genomes]
rs35048726	0.84[AFR][1000 genomes]
rs35323848	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35403206	0.84[AFR][1000 genomes]
rs35441072	1.00[AMR][1000 genomes]
rs35460744	0.80[AFR][1000 genomes]
rs35588100	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35625427	0.80[AFR][1000 genomes]
rs56310092	0.84[AFR][1000 genomes]
rs60597994	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61037617	0.82[AFR][1000 genomes]
rs71377358	0.84[AFR][1000 genomes]
rs71377361	0.81[AFR][1000 genomes]
rs8080031	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46438400-46471800	Weak transcription	Thymus	Thymus
2	chr17:46450800-46462000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr17:46452200-46463800	Weak transcription	Primary B cells from cord blood	blood
4	chr17:46452400-46463200	Strong transcription	Primary T cells from cord blood	blood
5	chr17:46454600-46461800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:46456400-46461600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:46456600-46462800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr17:46457400-46461800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46457600-46463200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr17:46457600-46464800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr17:46459800-46461200	Strong transcription	Fetal Thymus	thymus
12	chr17:46459800-46462000	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:46460400-46462000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:46460400-46462000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr17:46460400-46463200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr17:46460400-46463800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr17:46460400-46466400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr17:46460400-46471200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr17:46460600-46462000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr17:46460600-46462200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr17:46460600-46462400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr17:46460600-46463400	Enhancers	K562	blood
23	chr17:46460800-46462000	Weak transcription	GM12878-XiMat	blood

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