Variant report

Variant	rs34367404
Chromosome Location	chr17:46537566-46537567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr17:46537541-46537775	K562	blood:	n/a	chr17:46537627-46537638
2	USF1	chr17:46537357-46537845	HCT-116	colon:	n/a	n/a
3	USF1	chr17:46537532-46537741	GM12878	blood:	n/a	n/a
4	CTCF	chr17:46537500-46537650	GM12864	blood:	n/a	n/a
5	CTCF	chr17:46537500-46537650	GM12872	blood:	n/a	n/a
6	CTCF	chr17:46537440-46537590	MCF-7	breast:	n/a	n/a
7	CTCF	chr17:46537520-46537670	GM12878	blood:	n/a	n/a
8	USF1	chr17:46537350-46537779	H1-hESC	embryonic stem cell:	n/a	n/a
9	USF1	chr17:46537373-46537823	K562	blood:	n/a	n/a
10	USF1	chr17:46537376-46537773	H1-hESC	embryonic stem cell:	n/a	n/a
11	USF1	chr17:46537430-46537776	A549	lung:	n/a	n/a
12	USF2	chr17:46537516-46537696	GM12878	blood:	n/a	chr17:46537627-46537638
13	NFYB	chr17:46537498-46537802	GM12878	blood:	n/a	n/a
14	NFYB	chr17:46537533-46537815	K562	blood:	n/a	n/a
15	USF1	chr17:46537460-46537719	A549	lung:	n/a	n/a
16	USF1	chr17:46537449-46537819	K562	blood:	n/a	n/a
17	CTCF	chr17:46537500-46537650	HEK293	kidney:	n/a	n/a
18	CTCF	chr17:46537480-46537630	AG04450	lung:	n/a	n/a
19	CTCF	chr17:46537460-46537610	HEK293	kidney:	n/a	n/a
20	CTCF	chr17:46537540-46537690	GM12872	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX11-3	chr17:46537491-46538034	NONHSAT054397

Variant related genes	Relation type
ENSG00000264451	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1022087	0.94[AFR][1000 genomes]
rs12938165	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941129	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941352	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941742	0.94[AFR][1000 genomes]
rs12947993	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12948331	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12948470	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12950437	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34018531	0.82[AFR][1000 genomes]
rs34042333	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34206844	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34238294	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34287661	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34312987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34488822	1.00[AMR][1000 genomes]
rs34507526	0.94[AFR][1000 genomes]
rs34583963	0.82[AFR][1000 genomes]
rs34641642	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34736152	0.82[AFR][1000 genomes]
rs34931316	0.87[AFR][1000 genomes]
rs34938374	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34981051	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35048726	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35323848	0.84[AFR][1000 genomes]
rs35403206	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35457430	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35460744	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35588100	0.90[AFR][1000 genomes]
rs35625427	0.82[AFR][1000 genomes]
rs55657194	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56310092	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60597994	0.84[AFR][1000 genomes]
rs61037617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377358	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377360	0.86[AFR][1000 genomes]
rs71377364	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46535000-46540800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:46535400-46540600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr17:46536800-46537800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr17:46537000-46537800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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