Variant report

Variant	rs35588100
Chromosome Location	chr17:46544024-46544025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1022087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12938165	0.82[AFR][1000 genomes]
rs12941208	0.82[AFR][1000 genomes]
rs12941742	0.92[AFR][1000 genomes]
rs12948331	0.80[AFR][1000 genomes]
rs12948470	0.82[AFR][1000 genomes]
rs34042333	0.82[AFR][1000 genomes]
rs34171724	1.00[AMR][1000 genomes]
rs34206844	0.80[AFR][1000 genomes]
rs34212996	1.00[AMR][1000 genomes]
rs34238294	0.82[AFR][1000 genomes]
rs34287661	0.80[AFR][1000 genomes]
rs34312987	0.82[AFR][1000 genomes]
rs34367404	0.90[AFR][1000 genomes]
rs34507526	0.92[AFR][1000 genomes]
rs34931316	0.85[AFR][1000 genomes]
rs35323848	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35441072	1.00[AMR][1000 genomes]
rs35457430	0.82[AFR][1000 genomes]
rs35460744	0.80[AFR][1000 genomes]
rs55657194	0.82[AFR][1000 genomes]
rs60597994	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61037617	0.94[AFR][1000 genomes]
rs71377360	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377364	0.82[AFR][1000 genomes]
rs8080031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46542200-46549800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr17:46543200-46547600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr17:46543800-46549200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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