Variant report

Variant	rs34206844
Chromosome Location	chr17:46484827-46484828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1022087	0.84[AFR][1000 genomes]
rs12938165	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941129	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941742	0.84[AFR][1000 genomes]
rs12946679	0.89[AFR][1000 genomes]
rs12947993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12948331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12948470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12950437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34018531	0.93[AFR][1000 genomes]
rs34042333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34171724	0.84[AFR][1000 genomes]
rs34238294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34287661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34312987	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34367404	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34488822	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34507526	0.84[AFR][1000 genomes]
rs34583963	0.93[AFR][1000 genomes]
rs34641642	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34736152	0.93[AFR][1000 genomes]
rs34938374	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34981051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35048726	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35403206	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35441072	0.82[AFR][1000 genomes]
rs35457430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35460744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35513747	0.89[AFR][1000 genomes]
rs35532660	0.89[AFR][1000 genomes]
rs35588100	0.80[AFR][1000 genomes]
rs35625427	0.93[AFR][1000 genomes]
rs36052366	0.89[AFR][1000 genomes]
rs55657194	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56310092	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61037617	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377353	0.89[AFR][1000 genomes]
rs71377358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377360	0.80[AFR][1000 genomes]
rs71377364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8080031	0.84[AFR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46473200-46486200	Weak transcription	Thymus	Thymus
2	chr17:46473600-46486200	Weak transcription	Fetal Thymus	thymus
3	chr17:46475000-46486600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:46483000-46486400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr17:46483800-46485600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr17:46484000-46485200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr17:46484000-46485400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr17:46484000-46485400	Enhancers	HUVEC	blood vessel
9	chr17:46484200-46485200	Enhancers	Primary B cells from peripheral blood	blood
10	chr17:46484200-46485200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr17:46484200-46485200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:46484200-46485400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46484200-46485400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr17:46484200-46485400	Enhancers	GM12878-XiMat	blood
15	chr17:46484200-46486400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:46484200-46486800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr17:46484400-46485000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr17:46484400-46485200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr17:46484400-46485200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr17:46484400-46485600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr17:46484400-46485800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr17:46484600-46485000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr17:46484600-46485200	Enhancers	Primary hematopoietic stem cells	blood
24	chr17:46484600-46485400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr17:46484600-46486000	Enhancers	Primary T cells from cord blood	blood
26	chr17:46484800-46485000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood

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