Variant report

Variant	rs12941352
Chromosome Location	chr17:46497966-46497967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46497195..46500103-chr17:46505691..46509379,3	MCF-7	breast:
2	chr17:46491251..46493630-chr17:46497072..46499338,2	K562	blood:

Variant related genes	Relation type
ENSG00000141293	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1022087	0.81[AFR][1000 genomes]
rs12938165	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12941742	0.81[AFR][1000 genomes]
rs12946679	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12947993	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12948214	0.82[YRI][hapmap]
rs12948331	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12948470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12950437	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16954268	0.82[YRI][hapmap]
rs1979897	0.82[YRI][hapmap]
rs34018531	0.89[AFR][1000 genomes]
rs34042333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34171724	0.81[AFR][1000 genomes]
rs34206844	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34238294	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34287661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34312987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34367404	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34488822	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34507526	0.81[AFR][1000 genomes]
rs34583963	0.89[AFR][1000 genomes]
rs34641642	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34736152	0.89[AFR][1000 genomes]
rs34938374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34981051	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35048726	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35403206	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35457430	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35460744	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35513747	0.86[AFR][1000 genomes]
rs35532660	0.86[AFR][1000 genomes]
rs35625427	0.89[AFR][1000 genomes]
rs36052366	0.86[AFR][1000 genomes]
rs55657194	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56310092	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61037617	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377353	0.86[AFR][1000 genomes]
rs71377358	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8080031	1.00[ASW][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46486800-46503000	Weak transcription	Thymus	Thymus
2	chr17:46487600-46501800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46487800-46503600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:46488800-46498800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:46488800-46499200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr17:46489000-46501800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr17:46489200-46498200	Enhancers	Primary T cells from cord blood	blood
8	chr17:46489200-46502200	Weak transcription	Fetal Thymus	thymus
9	chr17:46489800-46505000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr17:46491400-46498000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr17:46492000-46503000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr17:46493200-46498000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:46494600-46498000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr17:46494600-46498000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr17:46494600-46503600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr17:46494800-46498000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr17:46494800-46498000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr17:46494800-46498000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:46494800-46498000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr17:46494800-46502600	Weak transcription	GM12878-XiMat	blood
21	chr17:46495200-46498000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr17:46497000-46498000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr17:46497000-46498000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr17:46497400-46498000	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr17:46497400-46502000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr17:46497600-46498600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr17:46497600-46499800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr17:46497800-46498400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr17:46497800-46498400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr17:46497800-46498400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr17:46497800-46498400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr17:46497800-46498600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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