Variant report

Variant	rs12946679
Chromosome Location	chr17:46356500-46356501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46355824..46358682-chr17:46365555..46368141,2	K562	blood:
2	chr17:46355099..46358065-chr17:46360042..46362532,3	MCF-7	breast:
3	chr17:46356294..46358923-chr17:46657734..46659838,2	K562	blood:

Variant related genes	Relation type
ENSG00000257178	Chromatin interaction

rs_ID	r²[population]
rs12938165	0.87[AFR][1000 genomes]
rs12941129	0.93[AFR][1000 genomes]
rs12941208	0.87[AFR][1000 genomes]
rs12941352	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12947993	0.93[AFR][1000 genomes]
rs12948214	0.82[YRI][hapmap]
rs12948331	0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs12948470	0.87[AFR][1000 genomes]
rs12950437	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1452663	0.82[YRI][hapmap]
rs16952687	0.82[YRI][hapmap]
rs16953941	0.82[YRI][hapmap]
rs16954268	0.82[YRI][hapmap]
rs1979897	0.82[YRI][hapmap]
rs208008	0.82[YRI][hapmap]
rs208009	0.82[YRI][hapmap]
rs2109983	0.81[YRI][hapmap]
rs2325804	0.82[YRI][hapmap]
rs34018531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34042333	0.87[AFR][1000 genomes]
rs34171724	0.94[AFR][1000 genomes]
rs34206844	0.89[AFR][1000 genomes]
rs34212996	0.83[AFR][1000 genomes]
rs34238294	0.87[AFR][1000 genomes]
rs34287661	0.89[AFR][1000 genomes]
rs34312987	0.87[AFR][1000 genomes]
rs34488822	0.90[AFR][1000 genomes]
rs34583963	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34641642	0.93[AFR][1000 genomes]
rs34736152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34938374	0.93[AFR][1000 genomes]
rs34981051	0.93[AFR][1000 genomes]
rs35048726	0.93[AFR][1000 genomes]
rs35323848	0.82[AFR][1000 genomes]
rs35403206	0.93[AFR][1000 genomes]
rs35441072	0.93[AFR][1000 genomes]
rs35457430	0.87[AFR][1000 genomes]
rs35460744	0.89[AFR][1000 genomes]
rs35513747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35532660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35625427	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36052366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55657194	0.87[AFR][1000 genomes]
rs56310092	0.93[AFR][1000 genomes]
rs60597994	0.82[AFR][1000 genomes]
rs71377353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377358	0.93[AFR][1000 genomes]
rs71377364	0.87[AFR][1000 genomes]
rs7224461	0.88[YRI][hapmap]
rs8071199	0.82[YRI][hapmap]
rs8071879	0.82[YRI][hapmap]
rs8080031	1.00[ASW][hapmap];0.94[AFR][1000 genomes]
rs978263	0.82[YRI][hapmap]

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:46354200-46356800	Strong transcription	Primary T cells from cord blood	blood
7	chr17:46355000-46357800	Enhancers	Fetal Intestine Large	intestine
8	chr17:46355400-46357000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46355600-46357800	Enhancers	Fetal Intestine Small	intestine
10	chr17:46355800-46357000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:46355800-46357400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr17:46355800-46357600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr17:46355800-46359600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:46356000-46356600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:46356000-46356800	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr17:46356000-46357000	Enhancers	K562	blood
17	chr17:46356000-46357400	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr17:46356000-46357400	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr17:46356200-46358200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
20	chr17:46356400-46362000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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