Variant report

Variant	rs34880376
Chromosome Location	chr10:19490457-19490458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10508576	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10763873	0.85[ASN][1000 genomes]
rs10763889	0.88[ASN][1000 genomes]
rs10763890	0.86[ASN][1000 genomes]
rs10763892	0.88[ASN][1000 genomes]
rs10826990	0.86[ASN][1000 genomes]
rs10826991	0.82[ASN][1000 genomes]
rs10826993	0.86[ASN][1000 genomes]
rs10826996	0.85[ASN][1000 genomes]
rs10826998	0.85[ASN][1000 genomes]
rs10826999	0.85[ASN][1000 genomes]
rs10827111	0.88[ASN][1000 genomes]
rs10827122	0.88[ASN][1000 genomes]
rs11008639	0.85[ASN][1000 genomes]
rs11008846	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11008904	0.98[ASN][1000 genomes]
rs12240337	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12243775	0.85[ASN][1000 genomes]
rs12250334	1.00[ASN][1000 genomes]
rs12265785	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12354759	0.88[ASN][1000 genomes]
rs12359699	0.91[ASN][1000 genomes]
rs12570472	0.82[EUR][1000 genomes]
rs12570966	0.82[EUR][1000 genomes]
rs12762251	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12767380	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12769479	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12769501	0.85[ASN][1000 genomes]
rs12773103	0.85[ASN][1000 genomes]
rs12775323	0.86[ASN][1000 genomes]
rs12779141	0.86[ASN][1000 genomes]
rs12779623	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12781273	0.91[ASN][1000 genomes]
rs12783745	0.82[EUR][1000 genomes]
rs1591329	0.96[ASN][1000 genomes]
rs16918302	0.85[ASN][1000 genomes]
rs17721336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722015	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1889514	1.00[ASN][1000 genomes]
rs2358338	0.86[ASN][1000 genomes]
rs2358339	0.85[ASN][1000 genomes]
rs2358340	0.85[ASN][1000 genomes]
rs2358341	0.84[EUR][1000 genomes]
rs2358344	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2583646	0.97[ASN][1000 genomes]
rs2884431	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34129683	0.84[EUR][1000 genomes]
rs34162471	0.86[ASN][1000 genomes]
rs34280396	0.85[ASN][1000 genomes]
rs34398776	0.82[EUR][1000 genomes]
rs34572308	0.91[ASN][1000 genomes]
rs34724539	0.92[EUR][1000 genomes]
rs35065389	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35139662	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35432267	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4259740	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4320861	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4351724	0.93[ASN][1000 genomes]
rs4364958	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4445549	0.83[ASN][1000 genomes]
rs4466729	0.86[ASN][1000 genomes]
rs4472834	0.86[ASN][1000 genomes]
rs4477351	0.85[ASN][1000 genomes]
rs4491125	0.85[ASN][1000 genomes]
rs4607972	0.82[ASN][1000 genomes]
rs4748558	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4748561	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748563	1.00[ASN][1000 genomes]
rs57020628	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58095759	0.85[ASN][1000 genomes]
rs60970424	0.91[ASN][1000 genomes]
rs61481867	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6481761	0.85[ASN][1000 genomes]
rs6481762	0.85[ASN][1000 genomes]
rs6481763	0.85[ASN][1000 genomes]
rs6481764	0.85[ASN][1000 genomes]
rs6481773	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67664564	0.82[ASN][1000 genomes]
rs7070471	0.98[ASN][1000 genomes]
rs7080208	0.86[ASN][1000 genomes]
rs7081923	0.88[ASN][1000 genomes]
rs7084827	0.86[ASN][1000 genomes]
rs7087763	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7092667	0.88[ASN][1000 genomes]
rs7092998	0.85[ASN][1000 genomes]
rs7093764	0.86[ASN][1000 genomes]
rs7097491	0.98[ASN][1000 genomes]
rs7097878	0.85[ASN][1000 genomes]
rs7098738	0.85[ASN][1000 genomes]
rs71472841	0.81[ASN][1000 genomes]
rs73593854	0.88[ASN][1000 genomes]
rs73593856	0.88[ASN][1000 genomes]
rs7477457	0.85[ASN][1000 genomes]
rs7894157	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7896381	0.85[ASN][1000 genomes]
rs7898234	0.85[ASN][1000 genomes]
rs7906085	0.85[ASN][1000 genomes]
rs7913024	0.85[ASN][1000 genomes]
rs7916470	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv466764	chr10:19400845-19979434	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv550128	chr10:19400845-19979434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2750885	chr10:19407891-19836364	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1043780	chr10:19415575-19827284	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1035870	chr10:19415575-19832047	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550129	chr10:19417181-19834795	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1035591	chr10:19417883-19823164	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv540506	chr10:19417883-19823164	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2750886	chr10:19432774-19832094	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv831802	chr10:19449261-19585888	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv430133	chr10:19452640-19490727	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv428552	chr10:19457788-19623823	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1047513	chr10:19461947-19810770	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv540507	chr10:19461947-19810770	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv947755	chr10:19483235-19492266	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19477800-19492200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:19487600-19496800	Weak transcription	Small Intestine	intestine
3	chr10:19489600-19493200	Weak transcription	Fetal Intestine Small	intestine
4	chr10:19490000-19492400	Weak transcription	Fetal Intestine Large	intestine

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