Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10147777	0.88[ASN][1000 genomes]
rs11846754	0.88[ASN][1000 genomes]
rs11850532	0.86[ASN][1000 genomes]
rs12891745	0.81[EUR][1000 genomes]
rs17104975	0.83[ASN][1000 genomes]
rs17768243	0.86[EUR][1000 genomes]
rs2238281	0.87[EUR][1000 genomes]
rs2238283	0.82[ASN][1000 genomes]
rs2238285	0.87[ASN][1000 genomes]
rs2239270	0.81[ASN][1000 genomes]
rs23219	0.87[ASN][1000 genomes]
rs34836658	0.81[EUR][1000 genomes]
rs34836887	0.81[EUR][1000 genomes]
rs35479711	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35607894	0.81[EUR][1000 genomes]
rs36327	0.87[ASN][1000 genomes]
rs59307289	0.82[ASN][1000 genomes]
rs71427137	0.81[EUR][1000 genomes]
rs714974	0.81[EUR][1000 genomes]
rs714975	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72407600-72409200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72407800-72408600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search: